Os04g0661800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : MED7 family protein.
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Os04g0661800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : MED7 family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 9.25 | 0.143 | 10.6 | 1.02 | 0.18 | -0.32 | -0.192 | 0.937 | 0.309 | 2.42 | 20.52 | 1152 | -- | -- |
| 10.01 | 0.147 | 10.6 | 0.828 | 0.152 | -0.272 | -0.101 | -- | 0.281 | 2.88 | 18.84 | 9644 | -- | -- |
| 9.33 | 0.142 | 10.6 | 1.03 | 0.139 | -0.298 | -- | 0.893 | 0.311 | 2.93 | 21.14 | 1573 | -- | -- |
| 10 | 0.147 | 10.6 | 0.872 | 0.158 | -0.358 | -- | -- | 0.298 | 2.87 | 13.74 | 9496 | -- | -- |
| 10.17 | 0.149 | 10.6 | 0.87 | -- | -0.35 | -- | 0.794 | 0.27 | -- | 21.14 | 1573 | -- | -- |
| 11.84 | 0.161 | 10.6 | 0.671 | 0.139 | -- | -0.123 | -- | 0.179 | 3.12 | -- | -- | -- | -- |
| 11.89 | 0.161 | 10.6 | 0.674 | 0.138 | -- | -- | -- | 0.18 | 3.1 | -- | -- | -- | -- |
| 10.48 | 0.151 | 10.6 | 0.755 | -- | -0.416 | -- | -- | 0.239 | -- | 10.6 | 8995 | -- | -- |
| 17.22 | 0.193 | 10.7 | -- | 0.134 | 0.415 | -- | -- | -0.0193 | 3.23 | 3.643 | 47520 | -- | -- |
| 12.98 | 0.168 | 10.6 | 0.68 | -- | -- | -- | -- | 0.183 | -- | -- | -- | -- | -- |
| 23.86 | 0.228 | 10.6 | -- | 0.151 | -- | -- | -- | 0.105 | 3.11 | -- | -- | -- | -- |
| 18.24 | 0.199 | 10.7 | -- | -- | 0.423 | -- | -- | -0.0189 | -- | 3.156 | 47520 | -- | -- |
| 25.17 | 0.234 | 10.6 | -- | -- | -- | -- | -- | 0.108 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 8.33 | humidity | 90.0 | 720 | > th | dose dependent | rect. | 6 | 16 |
| 6 | 8.61 | humidity | 90.0 | 720 | > th | dose dependent | sin | 22 | NA |
| 12 | 8.76 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 21 | 1 |
| 15 | 8.79 | humidity | 80.0 | 1440 | > th | dose independent | rect. | 9 | 12 |
| 17 | 8.80 | humidity | 80.0 | 1440 | < th | dose independent | rect. | 10 | 11 |
| 21 | 8.83 | humidity | 90.0 | 14400 | < th | dose independent | rect. | 21 | 1 |
| 24 | 8.83 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 16 | 2 |
| 26 | 8.84 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 17 | 2 |
| 29 | 8.85 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 17 | 2 |
| 33 | 8.85 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 17 | 2 |
| 38 | 8.86 | temperature | 20.0 | 1440 | > th | dose dependent | rect. | 13 | 2 |
| 41 | 8.86 | humidity | 80.0 | 1440 | > th | dose dependent | rect. | 10 | 4 |
| 42 | 8.86 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 13 | 6 |
| 43 | 8.86 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 11 | 8 |
| 44 | 8.86 | humidity | 70.0 | 1440 | > th | dose dependent | rect. | 9 | 12 |
| 47 | 8.87 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 21 | 1 |
| 55 | 8.89 | humidity | 80.0 | 1440 | < th | dose independent | sin | 22 | NA |
| 56 | 8.89 | humidity | 80.0 | 14400 | > th | dose independent | rect. | 17 | 1 |
| 72 | 8.90 | humidity | 80.0 | 1440 | > th | dose independent | sin | 21 | NA |
| 78 | 8.90 | humidity | 90.0 | 720 | > th | dose independent | rect. | 6 | 16 |
| 80 | 8.90 | humidity | 80.0 | 14400 | > th | dose dependent | rect. | 18 | 1 |
| 104 | 8.92 | humidity | 80.0 | 1440 | < th | dose independent | rect. | 10 | 5 |
| 149 | 8.95 | humidity | 80.0 | 14400 | < th | dose independent | rect. | 16 | 2 |
| 150 | 8.95 | humidity | 80.0 | 1440 | > th | dose independent | rect. | 10 | 4 |
| 156 | 8.95 | humidity | 80.0 | 1440 | > th | dose dependent | rect. | 9 | 6 |
| 164 | 8.96 | humidity | 70.0 | 1440 | > th | dose dependent | sin | 21 | NA |
| 190 | 8.98 | temperature | 10.0 | 1440 | > th | dose dependent | rect. | 13 | 2 |
| 198 | 8.98 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 13 | 10 |
| 200 | 8.98 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 11 | 12 |
| 233 | 9.00 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 16 | 7 |
| 245 | 9.01 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 16 | 6 |
| 246 | 9.01 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 16 | 6 |
| 263 | 9.01 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 16 | 6 |
| 280 | 9.02 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 11 | 7 |
| 282 | 9.02 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 11 | 7 |
| 298 | 9.02 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 11 | 7 |
| 310 | 9.03 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 13 | 5 |
| 337 | 9.04 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 13 | 5 |
| 347 | 9.04 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 11 | 11 |
| 357 | 9.04 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 13 | 5 |
| 397 | 9.05 | precipitation | 0.1 | 14400 | > th | dose dependent | sin | 19 | NA |
| 403 | 9.05 | humidity | 80.0 | 14400 | > th | dose dependent | rect. | 18 | 4 |
| 425 | 9.06 | humidity | 80.0 | 14400 | > th | dose independent | rect. | 13 | 6 |
| 437 | 9.06 | temperature | 20.0 | 1440 | > th | dose dependent | sin | 19 | NA |
| 452 | 9.06 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 19 | 7 |
| 633 | 9.11 | humidity | 80.0 | 43200 | < th | dose independent | rect. | 23 | 1 |
| 678 | 9.12 | humidity | 80.0 | 1440 | < th | dose independent | rect. | 11 | 1 |
| 783 | 9.14 | humidity | 80.0 | 43200 | > th | dose independent | rect. | 5 | 2 |
| 834 | 9.15 | humidity | 80.0 | 1440 | > th | dose independent | rect. | 11 | 1 |
| 836 | 9.15 | radiation | 1.0 | 4320 | < th | dose independent | rect. | 18 | 2 |
| 838 | 9.15 | radiation | 1.0 | 4320 | < th | dose independent | rect. | 18 | 4 |
| 855 | 9.15 | wind | 9.0 | 43200 | > th | dose dependent | rect. | 19 | 2 |
| 859 | 9.15 | temperature | 30.0 | 1440 | < th | dose dependent | rect. | 13 | 6 |
| 956 | 9.17 | radiation | 1.0 | 4320 | > th | dose independent | rect. | 18 | 11 |
| 966 | 9.17 | humidity | 70.0 | 1440 | > th | dose dependent | rect. | 17 | 2 |