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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os04g0660900

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : TGF-beta receptor, type I/II extracellular region family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.12 (0.0149) R2 : 0.00104
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.0216 (0.0314) R2dN8 : 0.00134 R2N8 : 0.00104
σ : 0.281
deviance : 36.18
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
33.77 0.273 3.12 0.0934 0.127 -0.181 -0.147 -0.698 0.0113 6.17 70.03 4453 -- --
34.4 0.273 3.11 0.0805 0.13 -0.222 -0.107 -- 0.0109 6.14 70.93 4369 -- --
33.71 0.27 3.12 0.106 0.125 -0.164 -- -0.819 0.008 6.39 71 6010 -- --
34.22 0.272 3.13 0.0814 0.147 -0.222 -- -- -0.0644 6.41 84 7310 -- --
34.53 0.274 3.12 0.109 -- -0.151 -- -0.801 0.016 -- 70.17 5846 -- --
35.22 0.278 3.11 0.0535 0.127 -- -0.155 -- 0.0244 6.14 -- -- -- --
35.26 0.278 3.11 0.0525 0.127 -- -- -- 0.0252 6.61 -- -- -- --
35.04 0.276 3.14 0.096 -- -0.243 -- -- -0.0748 -- 84 6980 -- --
34.42 0.273 3.14 -- 0.131 -0.215 -- -- -0.0791 6.41 83.46 7313 -- --
36.1 0.281 3.11 0.0555 -- -- -- -- 0.0277 -- -- -- -- --
35.34 0.278 3.11 -- 0.127 -- -- -- 0.0193 6.59 -- -- -- --
35.27 0.277 3.14 -- -- -0.229 -- -- -0.0772 -- 83.6 6988 -- --
36.18 0.281 3.12 -- -- -- -- -- 0.0216 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 30.53 atmosphere 1000.0 30 > th dose independent rect. 3 23
2 30.62 atmosphere 1005.0 90 > th dose dependent rect. 2 1
4 30.80 atmosphere 1005.0 10 > th dose dependent rect. 2 2
5 30.87 temperature 25.0 90 > th dose dependent rect. 1 3
7 30.94 temperature 25.0 90 > th dose independent rect. 1 3
16 31.25 temperature 25.0 90 > th dose independent rect. 1 1
18 31.27 radiation 1.0 43200 < th dose dependent rect. 3 1
21 31.34 radiation 1.0 4320 < th dose dependent rect. 3 1
32 31.39 wind 9.0 1440 < th dose independent rect. 3 1
33 31.39 temperature 10.0 1440 > th dose independent rect. 3 1
36 31.39 temperature 30.0 1440 < th dose independent rect. 3 1
40 31.39 humidity 50.0 1440 > th dose independent rect. 3 1
49 31.39 atmosphere 995.0 1440 > th dose independent rect. 3 1
50 31.39 radiation 1.0 1440 < th dose independent rect. 3 1
70 31.39 temperature 10.0 1440 > th dose independent rect. 4 23
88 31.43 wind 3.0 30 < th dose independent rect. 2 1
91 31.43 wind 5.0 30 < th dose dependent rect. 2 1
97 31.44 temperature 10.0 30 > th dose independent rect. 2 1
99 31.44 temperature 30.0 30 < th dose independent rect. 2 1
100 31.44 humidity 50.0 30 > th dose independent rect. 2 1
103 31.44 humidity 90.0 30 > th dose independent rect. 2 1
104 31.44 atmosphere 995.0 30 > th dose independent rect. 2 1
107 31.44 atmosphere 1010.0 30 < th dose independent rect. 2 1
109 31.44 radiation 1.0 30 < th dose independent rect. 2 1
114 31.44 precipitation 0.1 30 < th dose independent rect. 2 1
115 31.44 temperature 10.0 30 > th dose independent rect. 3 23
117 31.44 humidity 50.0 30 > th dose dependent rect. 2 1
122 31.44 radiation 1.0 30 < th dose dependent rect. 2 1
127 31.44 precipitation 0.1 30 < th dose dependent rect. 2 1
129 31.45 atmosphere 1010.0 30 < th dose dependent rect. 2 1
133 31.48 wind 1.0 30 > th dose independent rect. 2 1
136 31.49 temperature 30.0 30 < th dose dependent rect. 2 1
144 31.54 precipitation 0.1 30 < th dose independent rect. 3 23
148 31.54 precipitation 0.1 30 < th dose dependent rect. 3 23
207 31.89 wind 9.0 30 < th dose independent rect. 3 23
220 32.09 humidity 50.0 30 > th dose independent rect. 3 23
229 32.13 humidity 90.0 90 < th dose independent rect. 2 1
265 32.45 atmosphere 995.0 720 > th dose independent rect. 23 16
266 32.46 humidity 90.0 90 < th dose independent rect. 2 3
270 32.51 atmosphere 1005.0 30 > th dose independent rect. 2 3
290 32.68 wind 3.0 30 < th dose dependent rect. 2 3
296 32.75 atmosphere 1000.0 10 > th dose independent rect. 14 12
309 32.85 atmosphere 1000.0 10 > th dose independent rect. 21 23
319 32.88 atmosphere 995.0 720 > th dose independent rect. 3 23
329 32.92 atmosphere 1000.0 720 > th dose independent rect. 3 8
330 32.92 atmosphere 1000.0 10 > th dose independent rect. 16 10
331 32.92 humidity 60.0 10 > th dose independent rect. 14 12
335 32.94 precipitation 0.1 720 < th dose independent rect. 15 8
338 32.94 precipitation 0.1 720 < th dose dependent rect. 15 8
341 32.96 radiation 40.0 30 < th dose independent rect. 14 12
350 32.99 temperature 10.0 720 > th dose independent rect. 15 8
351 32.99 temperature 10.0 720 > th dose independent rect. 23 16
358 33.01 temperature 30.0 30 < th dose independent rect. 3 23
359 33.01 atmosphere 995.0 720 > th dose independent rect. 15 23
371 33.05 atmosphere 995.0 720 > th dose independent rect. 14 1
375 33.06 atmosphere 1000.0 10 > th dose independent rect. 2 12
381 33.06 radiation 40.0 10 < th dose dependent rect. 14 12
389 33.10 temperature 10.0 720 > th dose independent rect. 3 8
392 33.10 temperature 10.0 720 > th dose independent rect. 11 16
399 33.12 precipitation 0.1 720 < th dose independent rect. 11 16
401 33.12 precipitation 0.1 720 < th dose dependent rect. 11 16
409 33.17 atmosphere 995.0 30 > th dose dependent rect. 3 23
411 33.18 precipitation 0.1 10 < th dose independent rect. 2 12
412 33.18 atmosphere 1000.0 10 > th dose independent rect. 2 14
413 33.18 precipitation 0.1 10 < th dose dependent rect. 2 12
416 33.19 wind 9.0 10 < th dose independent rect. 2 12
417 33.19 wind 9.0 30 < th dose independent rect. 14 12
418 33.19 temperature 10.0 10 > th dose independent rect. 2 12
420 33.19 temperature 10.0 10 > th dose independent rect. 14 12
422 33.19 atmosphere 1015.0 10 < th dose independent rect. 2 12
423 33.19 wind 1.0 10 > th dose independent rect. 21 23
425 33.19 wind 3.0 30 < th dose dependent rect. 2 6
434 33.21 wind 9.0 720 < th dose independent rect. 3 8
438 33.21 radiation 1.0 30 < th dose dependent rect. 2 12
457 33.22 humidity 50.0 720 > th dose independent rect. 3 8
463 33.22 atmosphere 995.0 1440 > th dose independent rect. 3 12
472 33.22 humidity 80.0 14400 < th dose dependent rect. 3 6
473 33.22 radiation 30.0 10 < th dose dependent rect. 16 10
477 33.23 wind 1.0 720 > th dose independent rect. 14 1
486 33.24 temperature 10.0 720 > th dose independent rect. 14 1
493 33.24 atmosphere 1015.0 720 < th dose independent rect. 14 1
499 33.24 precipitation 0.1 720 < th dose independent rect. 2 1
500 33.24 precipitation 0.1 720 < th dose independent rect. 14 1
501 33.24 radiation 40.0 720 < th dose independent rect. 15 8
502 33.24 humidity 50.0 10 > th dose independent rect. 16 10
503 33.24 precipitation 0.1 10 < th dose independent rect. 14 12
504 33.24 precipitation 0.1 10 < th dose independent rect. 2 14
507 33.24 temperature 10.0 720 > th dose independent rect. 15 23
508 33.24 wind 9.0 720 < th dose dependent rect. 2 1
514 33.24 precipitation 0.1 720 < th dose dependent rect. 2 1
515 33.24 precipitation 0.1 720 < th dose dependent rect. 14 1
520 33.24 precipitation 0.1 10 < th dose dependent rect. 14 12
521 33.24 precipitation 0.1 10 < th dose dependent rect. 2 14
525 33.25 radiation 20.0 10 < th dose independent rect. 16 10
527 33.25 temperature 10.0 1440 > th dose independent rect. 3 12
530 33.25 temperature 10.0 1440 > th dose independent rect. 15 12
533 33.25 radiation 1.0 10 < th dose independent rect. 2 12
541 33.26 wind 9.0 10 < th dose independent rect. 16 10
542 33.26 temperature 10.0 10 > th dose independent rect. 16 10
545 33.26 humidity 50.0 10 > th dose independent rect. 2 12
546 33.26 temperature 10.0 10 > th dose independent rect. 2 14
548 33.26 atmosphere 1015.0 10 < th dose independent rect. 2 14
564 33.28 radiation 10.0 10 < th dose independent rect. 14 12
605 33.29 temperature 10.0 30 > th dose independent rect. 5 21
607 33.29 precipitation 0.1 720 < th dose independent rect. 15 23
618 33.29 precipitation 0.1 720 < th dose dependent rect. 15 23
621 33.30 precipitation 0.1 10 < th dose independent rect. 16 10
622 33.30 temperature 30.0 10 < th dose independent rect. 14 12
623 33.30 wind 9.0 10 < th dose independent rect. 2 14
624 33.30 precipitation 0.1 30 < th dose independent rect. 5 21
628 33.30 precipitation 0.1 10 < th dose dependent rect. 16 10
629 33.30 precipitation 0.1 30 < th dose dependent rect. 5 21
631 33.31 wind 9.0 1440 < th dose independent rect. 3 3
634 33.31 temperature 10.0 1440 > th dose independent rect. 3 3
638 33.31 temperature 30.0 1440 < th dose independent rect. 3 3
646 33.31 humidity 50.0 1440 > th dose independent rect. 3 3
657 33.31 atmosphere 995.0 1440 > th dose independent rect. 3 3
665 33.31 radiation 20.0 1440 < th dose independent rect. 3 3
678 33.31 temperature 10.0 1440 > th dose independent rect. 6 21
693 33.32 wind 9.0 720 < th dose independent rect. 14 1
697 33.32 humidity 50.0 30 > th dose independent rect. 5 21
701 33.33 temperature 30.0 10 < th dose independent rect. 16 10
718 33.35 temperature 10.0 1440 > th dose independent rect. 17 10
722 33.35 radiation 30.0 1440 < th dose independent rect. 17 10
730 33.35 temperature 10.0 1440 > th dose independent rect. 3 14
736 33.35 wind 9.0 30 < th dose independent rect. 5 21
748 33.36 radiation 1.0 30 < th dose dependent rect. 2 6
757 33.37 atmosphere 995.0 720 > th dose independent rect. 7 8
761 33.37 humidity 90.0 10 < th dose dependent rect. 20 1
767 33.37 humidity 80.0 14400 < th dose dependent rect. 21 13
770 33.38 humidity 50.0 10 > th dose independent rect. 2 14
771 33.38 radiation 1.0 1440 < th dose dependent rect. 21 1
775 33.38 humidity 80.0 14400 < th dose dependent rect. 23 11
779 33.39 radiation 1.0 720 > th dose independent rect. 14 1
791 33.40 radiation 1.0 10 < th dose independent rect. 2 6
796 33.40 atmosphere 1015.0 30 < th dose independent rect. 3 23
800 33.41 humidity 90.0 720 < th dose independent rect. 1 3
802 33.41 atmosphere 1000.0 720 > th dose independent rect. 3 6
810 33.42 humidity 70.0 14400 > th dose independent rect. 7 3
818 33.42 atmosphere 995.0 720 > th dose independent rect. 15 8
870 33.44 humidity 70.0 14400 < th dose independent rect. 6 4
884 33.44 temperature 25.0 720 > th dose dependent rect. 5 3
890 33.45 atmosphere 1005.0 10 > th dose independent rect. 20 1
893 33.45 humidity 70.0 14400 < th dose independent rect. 8 2
896 33.45 temperature 30.0 270 < th dose independent rect. 10 11
900 33.45 humidity 90.0 90 < th dose dependent rect. 2 1
904 33.45 wind 9.0 30 < th dose dependent rect. 3 23
905 33.46 humidity 90.0 10 < th dose independent rect. 20 1
908 33.46 wind 1.0 14400 < th dose dependent rect. 6 1
920 33.47 wind 9.0 720 < th dose independent rect. 15 8
925 33.47 atmosphere 1000.0 30 > th dose independent rect. 8 18
930 33.48 temperature 20.0 10 > th dose independent rect. 20 1
936 33.48 temperature 30.0 10 < th dose independent rect. 5 21
944 33.48 atmosphere 995.0 30 > th dose dependent rect. 14 12
958 33.50 atmosphere 1000.0 720 > th dose independent rect. 21 12
964 33.51 wind 5.0 10 < th dose independent rect. 20 1
968 33.51 temperature 30.0 30 < th dose dependent rect. 20 1
969 33.51 atmosphere 995.0 10 > th dose dependent rect. 20 1
973 33.51 radiation 1.0 90 < th dose dependent rect. 1 22
974 33.52 wind 1.0 10 > th dose independent rect. 20 1
977 33.52 temperature 10.0 10 > th dose independent rect. 20 1
979 33.52 temperature 30.0 10 < th dose independent rect. 20 1
980 33.52 humidity 70.0 4320 > th dose independent rect. 10 1
981 33.52 humidity 50.0 10 > th dose independent rect. 20 1
986 33.52 atmosphere 1010.0 10 < th dose independent rect. 20 1
988 33.52 radiation 1.0 10 < th dose independent rect. 20 1
993 33.52 precipitation 0.1 10 < th dose independent rect. 20 1
996 33.52 temperature 10.0 10 > th dose independent rect. 21 23
997 33.52 wind 7.0 10 < th dose dependent rect. 20 1
1000 33.52 radiation 1.0 10 < th dose dependent rect. 20 1