Os04g0660500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein kinase-like domain containing protein.
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Os04g0660500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein kinase-like domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 34.92 | 0.278 | 11.3 | 0.244 | 0.155 | -0.505 | -0.707 | 1.05 | 0.197 | 0.0293 | 10.31 | 238 | -- | -- |
| 36.35 | 0.281 | 11.3 | 0.229 | 0.0766 | -0.38 | -0.132 | -- | 0.19 | 19.1 | 11.33 | 212 | -- | -- |
| 35.34 | 0.277 | 11.3 | 0.261 | 0.17 | -0.522 | -- | 0.455 | 0.197 | 0.264 | 10.69 | 236 | -- | -- |
| 36.3 | 0.281 | 11.3 | 0.265 | 0.156 | -0.485 | -- | -- | 0.199 | 23.6 | 10.01 | 212 | -- | -- |
| 35.66 | 0.278 | 11.3 | 0.26 | -- | -0.395 | -- | 0.475 | 0.209 | -- | 11.5 | 249 | -- | -- |
| 37.95 | 0.289 | 11.3 | 0.284 | 0.414 | -- | -0.42 | -- | 0.218 | 14.5 | -- | -- | -- | -- |
| 38.59 | 0.291 | 11.3 | 0.273 | 0.412 | -- | -- | -- | 0.215 | 14.4 | -- | -- | -- | -- |
| 36.63 | 0.282 | 11.3 | 0.261 | -- | -0.387 | -- | -- | 0.201 | -- | 11.14 | 243 | -- | -- |
| 38.09 | 0.287 | 11.3 | -- | 0.128 | -0.466 | -- | -- | 0.168 | 23.2 | 11.81 | 212 | -- | -- |
| 48.64 | 0.326 | 11.3 | 0.255 | -- | -- | -- | -- | 0.205 | -- | -- | -- | -- | -- |
| 40.55 | 0.298 | 11.3 | -- | 0.407 | -- | -- | -- | 0.185 | 14.4 | -- | -- | -- | -- |
| 38.37 | 0.288 | 11.3 | -- | -- | -0.395 | -- | -- | 0.167 | -- | 13.66 | 238 | -- | -- |
| 50.36 | 0.331 | 11.3 | -- | -- | -- | -- | -- | 0.177 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 33.34 | wind | 9 | 10 | > th | dose dependent | rect. | 18 | 2 |
| 6 | 33.49 | wind | 9 | 10 | > th | dose independent | rect. | 18 | 1 |
| 12 | 33.58 | temperature | 20 | 720 | < th | dose independent | rect. | 6 | 1 |
| 14 | 33.59 | radiation | 1 | 30 | > th | dose dependent | rect. | 18 | 1 |
| 76 | 33.87 | temperature | 10 | 720 | > th | dose dependent | rect. | 1 | 6 |
| 151 | 34.13 | radiation | 30 | 90 | < th | dose dependent | rect. | 19 | 15 |
| 154 | 34.17 | radiation | 10 | 10 | < th | dose independent | rect. | 19 | 21 |
| 157 | 34.19 | radiation | 10 | 270 | < th | dose dependent | rect. | 11 | 21 |
| 164 | 34.25 | temperature | 15 | 720 | > th | dose dependent | rect. | 4 | 2 |
| 171 | 34.35 | temperature | 25 | 720 | < th | dose dependent | rect. | 6 | 1 |
| 190 | 34.39 | radiation | 20 | 30 | < th | dose independent | rect. | 19 | 15 |
| 192 | 34.42 | humidity | 80 | 4320 | > th | dose independent | rect. | 18 | 1 |
| 202 | 34.46 | radiation | 20 | 10 | < th | dose dependent | rect. | 19 | 21 |
| 206 | 34.51 | radiation | 10 | 10 | < th | dose independent | rect. | 19 | 19 |
| 217 | 34.56 | humidity | 80 | 4320 | < th | dose independent | rect. | 18 | 1 |
| 226 | 34.62 | temperature | 20 | 720 | > th | dose independent | rect. | 5 | 2 |
| 241 | 34.67 | humidity | 80 | 4320 | > th | dose dependent | rect. | 18 | 3 |
| 244 | 34.68 | humidity | 80 | 4320 | < th | dose independent | rect. | 17 | 3 |
| 272 | 34.72 | humidity | 80 | 10 | < th | dose dependent | rect. | 18 | 1 |
| 302 | 34.78 | radiation | 20 | 10 | < th | dose dependent | rect. | 19 | 19 |
| 310 | 34.81 | temperature | 20 | 720 | > th | dose independent | rect. | 2 | 7 |
| 315 | 34.83 | wind | 5 | 4320 | > th | dose independent | rect. | 19 | 1 |
| 322 | 34.84 | wind | 5 | 4320 | < th | dose independent | rect. | 19 | 1 |
| 323 | 34.84 | temperature | 20 | 720 | > th | dose independent | rect. | 2 | 5 |
| 329 | 34.85 | humidity | 90 | 4320 | > th | dose dependent | rect. | 20 | 3 |
| 342 | 34.89 | wind | 7 | 4320 | > th | dose independent | rect. | 15 | 1 |
| 343 | 34.89 | wind | 7 | 4320 | < th | dose independent | rect. | 15 | 1 |
| 344 | 34.89 | radiation | 1 | 30 | > th | dose independent | rect. | 18 | 1 |
| 358 | 34.90 | humidity | 90 | 4320 | > th | dose dependent | rect. | 19 | 5 |
| 378 | 34.94 | radiation | 10 | 270 | < th | dose dependent | rect. | 23 | 23 |
| 380 | 34.95 | temperature | 15 | 720 | > th | dose dependent | sin | 8 | NA |
| 381 | 34.95 | temperature | 15 | 720 | > th | dose dependent | rect. | 19 | 16 |
| 382 | 34.95 | radiation | 10 | 270 | < th | dose dependent | rect. | 21 | 23 |
| 388 | 34.97 | temperature | 20 | 720 | > th | dose independent | rect. | 1 | 12 |
| 393 | 34.97 | radiation | 30 | 270 | > th | dose dependent | rect. | 15 | 17 |
| 394 | 34.97 | temperature | 10 | 720 | > th | dose dependent | rect. | 19 | 18 |
| 396 | 34.98 | humidity | 90 | 14400 | > th | dose independent | rect. | 20 | 1 |
| 416 | 35.01 | radiation | 10 | 270 | > th | dose dependent | rect. | 14 | 19 |
| 424 | 35.03 | temperature | 20 | 720 | < th | dose dependent | rect. | 23 | 8 |
| 441 | 35.05 | radiation | 10 | 270 | < th | dose independent | rect. | 15 | 16 |
| 482 | 35.08 | radiation | 10 | 270 | < th | dose independent | rect. | 11 | 21 |
| 519 | 35.12 | humidity | 90 | 4320 | < th | dose independent | rect. | 20 | 1 |
| 537 | 35.14 | radiation | 10 | 270 | < th | dose dependent | no | NA | NA |
| 545 | 35.14 | temperature | 10 | 720 | > th | dose dependent | rect. | 23 | 14 |
| 554 | 35.15 | humidity | 70 | 14400 | > th | dose dependent | rect. | 19 | 10 |
| 569 | 35.16 | humidity | 70 | 14400 | > th | dose dependent | rect. | 2 | 6 |
| 572 | 35.16 | humidity | 50 | 14400 | > th | dose dependent | rect. | 19 | 11 |
| 592 | 35.17 | humidity | 50 | 14400 | > th | dose dependent | rect. | 24 | 8 |
| 615 | 35.18 | temperature | 15 | 720 | > th | dose dependent | rect. | 19 | 12 |
| 622 | 35.19 | humidity | 90 | 4320 | > th | dose independent | rect. | 20 | 3 |
| 624 | 35.19 | humidity | 90 | 4320 | > th | dose independent | rect. | 18 | 5 |
| 643 | 35.20 | wind | 7 | 4320 | > th | dose dependent | rect. | 14 | 2 |
| 653 | 35.21 | humidity | 70 | 14400 | > th | dose dependent | sin | 10 | NA |
| 674 | 35.22 | radiation | 30 | 270 | > th | dose independent | rect. | 15 | 17 |
| 759 | 35.25 | atmosphere | 995 | 30 | > th | dose dependent | rect. | 8 | 11 |
| 788 | 35.27 | temperature | 20 | 720 | < th | dose dependent | sin | 8 | NA |
| 809 | 35.27 | wind | 5 | 4320 | > th | dose dependent | rect. | 3 | 17 |
| 837 | 35.28 | radiation | 10 | 270 | < th | dose dependent | rect. | 15 | 23 |
| 838 | 35.29 | temperature | 20 | 720 | > th | dose independent | sin | 6 | NA |
| 841 | 35.29 | wind | 9 | 10 | > th | dose dependent | sin | 10 | NA |
| 860 | 35.30 | wind | 7 | 4320 | < th | dose independent | rect. | 2 | 15 |
| 882 | 35.31 | radiation | 30 | 270 | < th | dose independent | sin | 12 | NA |
| 886 | 35.31 | wind | 7 | 4320 | > th | dose independent | rect. | 3 | 13 |
| 894 | 35.31 | wind | 5 | 4320 | > th | dose independent | rect. | 2 | 18 |
| 931 | 35.32 | wind | 7 | 4320 | < th | dose independent | rect. | 12 | 8 |
| 974 | 35.33 | humidity | 90 | 14400 | < th | dose independent | rect. | 6 | 1 |
| 980 | 35.33 | wind | 7 | 4320 | > th | dose independent | rect. | 12 | 8 |
| 997 | 35.33 | wind | 3 | 4320 | > th | dose dependent | rect. | 19 | 1 |