Os04g0660000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os04g0660000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 41.76 | 0.304 | 2.91 | -0.00229 | 0.287 | 0.191 | -0.799 | -1.04 | 0.0439 | 13.8 | 7.717 | 226 | -- | -- |
| 42.69 | 0.304 | 2.91 | 0.0101 | 0.163 | 0.164 | 0.25 | -- | 0.0575 | 14 | 22.16 | 362 | -- | -- |
| 42.24 | 0.303 | 2.91 | 0.0226 | 0.181 | 0.138 | -- | -0.59 | 0.0727 | 13.8 | 13.96 | 247 | -- | -- |
| 42.74 | 0.304 | 2.91 | -0.00989 | 0.151 | 0.172 | -- | -- | 0.0516 | 14.1 | 37.01 | 371 | -- | -- |
| 43.07 | 0.306 | 2.92 | 0.0249 | -- | -0.00625 | -- | -0.532 | 0.0435 | -- | 21 | 222 | -- | -- |
| 43.06 | 0.308 | 2.91 | -0.0154 | 0.0782 | -- | 0.311 | -- | 0.0384 | 12 | -- | -- | -- | -- |
| 43.43 | 0.309 | 2.91 | -0.00211 | 0.0825 | -- | -- | -- | 0.0405 | 13.4 | -- | -- | -- | -- |
| 43.67 | 0.308 | 2.91 | 0.00644 | -- | 0.0886 | -- | -- | 0.0472 | -- | 46.03 | 430 | -- | -- |
| 42.7 | 0.304 | 2.91 | -- | 0.14 | 0.195 | -- | -- | 0.0588 | 14.1 | 38.71 | 387 | -- | -- |
| 43.85 | 0.309 | 2.91 | -0.00536 | -- | -- | -- | -- | 0.0387 | -- | -- | -- | -- | -- |
| 43.43 | 0.308 | 2.91 | -- | 0.0825 | -- | -- | -- | 0.0407 | 13.4 | -- | -- | -- | -- |
| 43.44 | 0.307 | 2.91 | -- | -- | 0.082 | -- | -- | 0.0536 | -- | 42.21 | 1129 | -- | -- |
| 43.85 | 0.309 | 2.91 | -- | -- | -- | -- | -- | 0.0393 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 38.68 | wind | 9.0 | 30 | < th | dose independent | rect. | 21 | 23 |
| 2 | 38.69 | atmosphere | 1000.0 | 90 | < th | dose dependent | rect. | 10 | 1 |
| 3 | 38.69 | atmosphere | 1000.0 | 10 | < th | dose dependent | rect. | 11 | 1 |
| 13 | 38.71 | wind | 1.0 | 10 | < th | dose independent | rect. | 11 | 2 |
| 17 | 38.77 | temperature | 30.0 | 30 | < th | dose dependent | rect. | 20 | 1 |
| 18 | 38.79 | wind | 5.0 | 30 | < th | dose dependent | rect. | 20 | 1 |
| 19 | 38.81 | wind | 1.0 | 10 | < th | dose dependent | rect. | 11 | 2 |
| 21 | 38.82 | wind | 1.0 | 30 | > th | dose independent | rect. | 20 | 1 |
| 22 | 38.82 | wind | 9.0 | 30 | < th | dose independent | rect. | 20 | 1 |
| 23 | 38.82 | temperature | 10.0 | 30 | > th | dose independent | rect. | 20 | 1 |
| 25 | 38.82 | temperature | 30.0 | 30 | < th | dose independent | rect. | 20 | 1 |
| 26 | 38.82 | humidity | 50.0 | 30 | > th | dose independent | rect. | 20 | 1 |
| 29 | 38.82 | atmosphere | 995.0 | 30 | > th | dose independent | rect. | 20 | 1 |
| 31 | 38.82 | atmosphere | 1010.0 | 30 | < th | dose independent | rect. | 20 | 1 |
| 33 | 38.82 | radiation | 1.0 | 30 | < th | dose independent | rect. | 20 | 1 |
| 38 | 38.82 | precipitation | 0.1 | 30 | < th | dose independent | rect. | 20 | 1 |
| 39 | 38.82 | temperature | 10.0 | 30 | > th | dose independent | rect. | 21 | 23 |
| 40 | 38.82 | wind | 9.0 | 30 | < th | dose dependent | rect. | 20 | 1 |
| 41 | 38.82 | atmosphere | 1015.0 | 30 | < th | dose dependent | rect. | 20 | 1 |
| 42 | 38.82 | radiation | 1.0 | 30 | < th | dose dependent | rect. | 20 | 1 |
| 47 | 38.82 | precipitation | 0.1 | 30 | < th | dose dependent | rect. | 20 | 1 |
| 49 | 38.83 | humidity | 50.0 | 30 | > th | dose dependent | rect. | 20 | 1 |
| 51 | 38.84 | atmosphere | 995.0 | 30 | > th | dose dependent | rect. | 20 | 1 |
| 55 | 38.87 | wind | 1.0 | 30 | > th | dose dependent | rect. | 20 | 1 |
| 58 | 38.88 | wind | 5.0 | 30 | < th | dose independent | rect. | 20 | 1 |
| 59 | 38.88 | temperature | 10.0 | 30 | > th | dose dependent | rect. | 20 | 1 |
| 62 | 38.90 | humidity | 90.0 | 30 | < th | dose independent | rect. | 20 | 1 |
| 64 | 38.91 | temperature | 25.0 | 10 | > th | dose independent | rect. | 20 | 1 |
| 68 | 38.94 | radiation | 20.0 | 4320 | < th | dose dependent | rect. | 21 | 1 |
| 69 | 38.95 | humidity | 90.0 | 30 | < th | dose dependent | rect. | 20 | 1 |
| 71 | 38.95 | radiation | 20.0 | 43200 | < th | dose dependent | rect. | 21 | 1 |
| 112 | 39.02 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 21 | 1 |
| 115 | 39.02 | temperature | 30.0 | 1440 | < th | dose independent | rect. | 21 | 1 |
| 119 | 39.02 | humidity | 50.0 | 1440 | > th | dose independent | rect. | 21 | 1 |
| 125 | 39.02 | atmosphere | 995.0 | 1440 | > th | dose independent | rect. | 21 | 1 |
| 126 | 39.02 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 21 | 1 |
| 146 | 39.02 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 22 | 23 |
| 159 | 39.08 | atmosphere | 1000.0 | 90 | < th | dose independent | rect. | 10 | 1 |
| 164 | 39.12 | atmosphere | 1000.0 | 10 | < th | dose independent | rect. | 11 | 1 |
| 233 | 40.11 | atmosphere | 995.0 | 10 | > th | dose independent | rect. | 21 | 23 |
| 244 | 40.29 | temperature | 30.0 | 90 | > th | dose dependent | rect. | 10 | 1 |
| 315 | 40.68 | precipitation | 0.1 | 90 | < th | dose independent | rect. | 21 | 22 |
| 316 | 40.68 | precipitation | 0.1 | 90 | < th | dose dependent | rect. | 21 | 22 |
| 326 | 40.70 | precipitation | 0.1 | 10 | < th | dose independent | rect. | 21 | 23 |
| 329 | 40.70 | precipitation | 0.1 | 10 | < th | dose dependent | rect. | 21 | 23 |
| 358 | 40.87 | temperature | 30.0 | 90 | > th | dose dependent | rect. | 18 | 18 |
| 377 | 40.90 | temperature | 30.0 | 270 | > th | dose dependent | rect. | 8 | 1 |
| 392 | 40.91 | temperature | 30.0 | 270 | > th | dose independent | rect. | 8 | 1 |
| 422 | 40.92 | humidity | 50.0 | 90 | > th | dose independent | rect. | 21 | 22 |
| 429 | 40.95 | temperature | 30.0 | 90 | > th | dose independent | rect. | 10 | 1 |
| 436 | 40.98 | humidity | 80.0 | 90 | > th | dose independent | rect. | 17 | 4 |
| 495 | 41.12 | radiation | 1.0 | 90 | < th | dose dependent | rect. | 17 | 4 |
| 496 | 41.12 | temperature | 25.0 | 30 | > th | dose dependent | rect. | 19 | 11 |
| 527 | 41.19 | radiation | 1.0 | 90 | < th | dose independent | rect. | 17 | 4 |
| 631 | 41.22 | temperature | 30.0 | 90 | > th | dose dependent | sin | 9 | NA |
| 639 | 41.22 | radiation | 10.0 | 270 | < th | dose dependent | rect. | 8 | 13 |
| 702 | 41.27 | wind | 9.0 | 30 | > th | dose dependent | rect. | 11 | 1 |
| 748 | 41.31 | wind | 9.0 | 30 | > th | dose dependent | rect. | 19 | 17 |
| 755 | 41.32 | radiation | 10.0 | 270 | < th | dose independent | rect. | 9 | 12 |
| 865 | 41.36 | wind | 9.0 | 30 | > th | dose independent | rect. | 11 | 1 |
| 937 | 41.38 | wind | 1.0 | 90 | > th | dose independent | rect. | 21 | 22 |
| 965 | 41.39 | wind | 9.0 | 30 | > th | dose independent | rect. | 18 | 18 |