Os04g0659500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein phosphatase 2C-like domain containing protein.
FiT-DB / Search/ Help/ Sample detail
|
Os04g0659500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
|
Description : Protein phosphatase 2C-like domain containing protein.
|
|
log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
|
_____ |
|
__
Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 28.72 | 0.252 | 13.3 | -0.369 | 0.769 | 0.104 | 0.295 | -4.39 | 0.228 | 2.3 | 25.01 | 3838 | -- | -- |
| 34.46 | 0.273 | 13.2 | 0.663 | 0.753 | -0.273 | -0.118 | -- | 0.462 | 2.48 | 23.48 | 17698 | -- | -- |
| 28.92 | 0.25 | 13.3 | -0.371 | 0.763 | 0.121 | -- | -4.53 | 0.236 | 2.31 | 25.45 | 3533 | -- | -- |
| 31.86 | 0.263 | 13.1 | 0.832 | 0.731 | -0.512 | -- | -- | 0.689 | 2.32 | 27.5 | 18906 | -- | -- |
| 48.14 | 0.325 | 13.2 | 0.618 | -- | -0.9 | -- | -0.8 | 0.487 | -- | 25.27 | 3438 | -- | -- |
| 37.44 | 0.287 | 13.2 | 0.55 | 0.742 | -- | 0.121 | -- | 0.437 | 2.28 | -- | -- | -- | -- |
| 37.49 | 0.287 | 13.2 | 0.547 | 0.742 | -- | -- | -- | 0.436 | 2.26 | -- | -- | -- | -- |
| 48.41 | 0.325 | 13.2 | 0.705 | -- | -0.959 | -- | -- | 0.51 | -- | 25.27 | 3438 | -- | -- |
| 43.41 | 0.307 | 13.2 | -- | 0.762 | -0.25 | -- | -- | 0.46 | 2.25 | 32.11 | 12627 | -- | -- |
| 70.2 | 0.392 | 13.2 | 0.578 | -- | -- | -- | -- | 0.454 | -- | -- | -- | -- | -- |
| 45.37 | 0.315 | 13.2 | -- | 0.752 | -- | -- | -- | 0.375 | 2.28 | -- | -- | -- | -- |
| 61.27 | 0.366 | 13.2 | -- | -- | -0.857 | -- | -- | 0.427 | -- | 25.27 | 3438 | -- | -- |
| 79.01 | 0.415 | 13.2 | -- | -- | -- | -- | -- | 0.39 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
|
Histogram 
|
Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 25.85 | wind | 1 | 14400 | > th | dose independent | rect. | 2 | 1 |
| 2 | 26.11 | wind | 1 | 14400 | < th | dose independent | rect. | 2 | 1 |
| 3 | 26.88 | radiation | 20 | 1440 | < th | dose independent | rect. | 11 | 1 |
| 4 | 26.99 | wind | 1 | 14400 | < th | dose dependent | rect. | 2 | 1 |
| 5 | 27.17 | wind | 3 | 43200 | > th | dose dependent | rect. | 7 | 1 |
| 6 | 27.19 | temperature | 20 | 4320 | > th | dose dependent | rect. | 10 | 1 |
| 13 | 27.49 | wind | 3 | 43200 | > th | dose dependent | rect. | 6 | 3 |
| 20 | 27.56 | temperature | 10 | 14400 | > th | dose dependent | rect. | 7 | 1 |
| 21 | 27.56 | temperature | 30 | 14400 | < th | dose dependent | rect. | 7 | 1 |
| 22 | 27.56 | temperature | 30 | 4320 | < th | dose dependent | rect. | 9 | 1 |
| 26 | 27.58 | temperature | 10 | 14400 | > th | dose dependent | rect. | 6 | 4 |
| 28 | 27.60 | temperature | 20 | 14400 | < th | dose independent | rect. | 24 | 1 |
| 61 | 27.69 | temperature | 20 | 14400 | > th | dose independent | rect. | 24 | 1 |
| 70 | 27.70 | temperature | 10 | 14400 | > th | dose dependent | rect. | 4 | 10 |
| 76 | 27.72 | wind | 1 | 14400 | < th | dose independent | rect. | 2 | 4 |
| 113 | 27.76 | temperature | 10 | 14400 | > th | dose dependent | sin | 3 | NA |
| 124 | 27.77 | humidity | 80 | 43200 | > th | dose dependent | rect. | 12 | 1 |
| 153 | 27.79 | temperature | 10 | 14400 | > th | dose dependent | rect. | 20 | 19 |
| 168 | 27.80 | temperature | 10 | 14400 | > th | dose dependent | rect. | 21 | 17 |
| 199 | 27.82 | wind | 1 | 43200 | < th | dose dependent | rect. | 2 | 5 |
| 212 | 27.83 | wind | 5 | 43200 | > th | dose independent | rect. | 5 | 5 |
| 235 | 27.83 | temperature | 10 | 14400 | > th | dose dependent | rect. | 4 | 18 |
| 247 | 27.84 | wind | 5 | 43200 | < th | dose independent | rect. | 5 | 5 |
| 295 | 27.85 | temperature | 10 | 14400 | > th | dose dependent | no | NA | NA |
| 296 | 27.85 | temperature | 30 | 14400 | < th | dose dependent | sin | 4 | NA |
| 300 | 27.85 | humidity | 90 | 14400 | > th | dose dependent | rect. | 4 | 4 |
| 331 | 27.85 | temperature | 10 | 14400 | > th | dose dependent | rect. | 13 | 22 |
| 381 | 27.87 | wind | 5 | 43200 | < th | dose independent | rect. | 6 | 3 |
| 404 | 27.87 | temperature | 30 | 14400 | < th | dose dependent | rect. | 20 | 18 |
| 436 | 27.88 | temperature | 30 | 14400 | < th | dose dependent | rect. | 19 | 16 |
| 459 | 27.89 | wind | 5 | 43200 | < th | dose independent | rect. | 7 | 1 |
| 461 | 27.89 | temperature | 10 | 14400 | > th | dose dependent | rect. | 20 | 2 |
| 462 | 27.89 | temperature | 30 | 14400 | < th | dose dependent | rect. | 20 | 2 |
| 548 | 27.90 | temperature | 30 | 14400 | < th | dose dependent | rect. | 13 | 22 |
| 597 | 27.91 | temperature | 30 | 14400 | < th | dose dependent | rect. | 2 | 20 |
| 688 | 27.93 | temperature | 30 | 14400 | < th | dose dependent | no | NA | NA |
| 748 | 27.94 | wind | 5 | 43200 | > th | dose independent | rect. | 7 | 1 |
| 873 | 27.96 | humidity | 90 | 14400 | > th | dose dependent | rect. | 20 | 14 |
| 893 | 27.97 | temperature | 20 | 43200 | > th | dose independent | rect. | 20 | 1 |
| 931 | 27.98 | temperature | 20 | 14400 | > th | dose independent | rect. | 21 | 6 |
| 932 | 27.98 | temperature | 20 | 14400 | < th | dose independent | rect. | 21 | 6 |
| 933 | 27.98 | temperature | 10 | 14400 | > th | dose dependent | sin | 17 | NA |
| 935 | 27.98 | temperature | 10 | 14400 | > th | dose dependent | rect. | 13 | 1 |
| 946 | 27.98 | temperature | 10 | 14400 | > th | dose dependent | rect. | 12 | 14 |
| 968 | 27.99 | temperature | 20 | 14400 | < th | dose independent | rect. | 20 | 8 |
| 973 | 27.99 | humidity | 90 | 14400 | > th | dose dependent | rect. | 5 | 1 |
| 999 | 28.00 | humidity | 90 | 14400 | > th | dose independent | rect. | 19 | 9 |