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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os04g0659300

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Protein of unknown function DUF26 domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 7.35 (0.448) R2 : 0.3
β1 : 10.6 (1.37) R2dD : 7.61 R2D : -25.9
β2 : -- (--) R2dC : -- R2C : --
β3 : 146 (17.1) R2dE : 616 R2E : -616
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : 440 (52.2) R2dD*E : 595 R2D*E : -594
γ1 : -0.451 (0.0903) R2dN8 : 0.0516 R2N8 : -16.1
σ : 0.784
deviance : 283.55
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_____
C
peak time of C : --
E
wheather : radiation
threshold : 1.025
memory length : 1442
response mode : < th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 11
open length of G : 1.02

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
270.28 0.766 7.33 10.6 0.466 146 0.353 439 -0.449 9.64 1 1442 11 1
342.46 0.869 3.59 -1.09 0.553 0.0364 -0.189 -- -0.537 8.62 1 1442 11 1
270.74 0.766 7.33 10.6 0.467 146 -- 439 -0.448 9.56 0.9875 1453 11 1.01
310.93 0.821 3.57 -0.984 0.553 1.64 -- -- -0.492 8.53 0.0009315 1321 12 0.314
283.55 0.784 7.35 10.6 -- 146 -- 440 -0.451 -- 1.025 1442 11 1.02
342.47 0.868 3.59 -1.09 0.554 -- -0.189 -- -0.537 8.62 -- -- -- --
342.56 0.867 3.59 -1.1 0.552 -- -- -- -0.536 8.75 -- -- -- --
328.38 0.844 3.58 -0.807 -- 1.76 -- -- -0.439 -- 1.358 1687 11.7 0.588
314.49 0.826 3.58 -- 0.601 1.45 -- -- -0.268 8.49 0.2367 20749 11.9 0.283
359.86 0.886 3.61 -1.1 -- -- -- -- -0.532 -- -- -- -- --
374.41 0.905 3.56 -- 0.55 -- -- -- -0.414 8.9 -- -- -- --
326.74 0.842 3.54 -- -- 1.41 -- -- -0.174 -- 1.397 20610 12.5 0.85
391.7 0.924 3.58 -- -- -- -- -- -0.41 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 270.28 radiation 1.0 1440 < th dose independent rect. 11 1
2 270.28 radiation 1.0 1440 < th dose dependent rect. 11 1
3 288.54 precipitation 0.1 1440 > th dose independent rect. 3 1
4 288.54 precipitation 0.1 1440 > th dose dependent rect. 3 1
5 291.45 precipitation 0.1 1440 < th dose independent rect. 3 1
6 291.45 precipitation 0.1 1440 < th dose dependent rect. 3 1
7 292.35 wind 3.0 1440 > th dose dependent rect. 21 1
9 293.62 wind 9.0 1440 < th dose dependent rect. 21 1
11 295.55 radiation 1.0 1440 > th dose independent rect. 11 20
12 295.75 radiation 1.0 1440 < th dose independent rect. 11 20
14 295.99 radiation 1.0 1440 > th dose independent rect. 18 22
18 296.26 radiation 1.0 1440 < th dose independent rect. 18 22
24 297.09 wind 5.0 1440 < th dose independent rect. 21 1
30 297.57 wind 5.0 1440 > th dose independent rect. 21 1
31 297.63 precipitation 0.1 270 > th dose independent rect. 2 2
32 297.66 precipitation 0.1 270 > th dose dependent rect. 2 2
37 298.04 wind 5.0 1440 > th dose independent rect. 17 15
44 298.26 wind 5.0 1440 < th dose independent rect. 17 15
49 298.61 radiation 1.0 1440 > th dose independent rect. 4 12
63 298.83 radiation 1.0 1440 < th dose independent rect. 1 15
69 298.90 radiation 1.0 1440 < th dose independent rect. 23 17
88 299.15 wind 5.0 1440 < th dose independent rect. 15 18
95 299.29 wind 5.0 1440 > th dose independent sin 12 NA
100 299.40 wind 5.0 1440 < th dose independent sin 12 NA
108 299.58 wind 3.0 1440 > th dose dependent rect. 17 15
137 300.05 wind 7.0 4320 > th dose independent rect. 17 4
146 300.23 wind 7.0 4320 < th dose independent rect. 17 4
221 301.17 wind 3.0 1440 > th dose dependent sin 11 NA
227 301.24 precipitation 0.1 270 > th dose independent rect. 24 4
247 301.36 wind 5.0 720 > th dose dependent rect. 6 1
264 301.57 radiation 1.0 1440 > th dose independent no NA NA
265 301.57 radiation 1.0 1440 > th dose independent rect. 4 15
314 301.64 radiation 1.0 1440 > th dose independent rect. 14 1
327 301.67 radiation 1.0 1440 < th dose independent rect. 1 19
333 301.68 radiation 1.0 1440 < th dose independent rect. 1 23
339 301.70 radiation 1.0 1440 < th dose independent rect. 23 21
361 301.75 radiation 1.0 1440 < th dose independent no NA NA
432 302.17 radiation 1.0 1440 < th dose independent rect. 14 1
434 302.17 radiation 1.0 1440 < th dose dependent rect. 14 1
469 302.41 radiation 1.0 1440 > th dose independent sin 1 NA
473 302.46 wind 3.0 4320 > th dose dependent rect. 18 5
478 302.49 wind 7.0 4320 > th dose independent rect. 17 1
484 302.57 radiation 1.0 1440 < th dose independent sin 1 NA
504 302.71 wind 5.0 4320 > th dose dependent rect. 18 3
529 302.89 wind 9.0 1440 < th dose independent rect. 21 13
625 303.40 wind 5.0 720 > th dose independent rect. 5 2
632 303.42 wind 5.0 1440 < th dose independent rect. 21 23
642 303.47 wind 9.0 1440 < th dose dependent rect. 18 5
659 303.56 wind 5.0 1440 < th dose independent rect. 1 23
668 303.59 radiation 1.0 1440 < th dose dependent rect. 10 6
696 303.71 wind 5.0 1440 < th dose independent no NA NA
697 303.72 radiation 1.0 1440 > th dose independent sin 13 NA
698 303.72 wind 9.0 1440 < th dose dependent rect. 17 19
709 303.76 wind 7.0 1440 < th dose dependent rect. 2 21
738 303.92 wind 5.0 1440 > th dose independent rect. 21 23
739 303.93 wind 9.0 1440 > th dose independent rect. 21 1
742 303.93 wind 9.0 1440 > th dose dependent rect. 21 1
743 303.94 radiation 1.0 1440 < th dose independent sin 13 NA
762 304.00 wind 5.0 1440 > th dose independent rect. 1 23
774 304.08 precipitation 0.1 1440 < th dose independent rect. 24 4
776 304.08 precipitation 0.1 1440 < th dose dependent rect. 24 4
787 304.13 wind 5.0 1440 > th dose independent no NA NA
820 304.32 radiation 1.0 1440 < th dose dependent rect. 5 11
829 304.38 radiation 1.0 1440 < th dose independent rect. 10 5
832 304.38 wind 1.0 1440 > th dose dependent rect. 2 21
839 304.40 wind 5.0 1440 < th dose independent rect. 4 23
885 304.52 wind 3.0 1440 > th dose dependent rect. 11 22
912 304.63 radiation 1.0 1440 < th dose dependent rect. 1 15
925 304.70 radiation 1.0 1440 < th dose dependent rect. 23 17
931 304.72 radiation 1.0 1440 < th dose dependent rect. 19 21
962 304.80 wind 5.0 1440 > th dose independent rect. 4 23