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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os04g0659200

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 2.99 (0.0149) R2 : 0.0108
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.0703 (0.0315) R2dN8 : 0.014 R2N8 : 0.0108
σ : 0.281
deviance : 36.35
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = atmosphere, response mode = < th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
32.83 0.269 2.98 -0.0798 0.144 -0.246 -0.237 0.497 0.0808 7.35 1015 3379 -- --
33.36 0.269 2.99 -0.113 0.146 -0.276 -0.217 -- 0.0703 7.19 1015 3328 -- --
32.98 0.267 2.98 -0.0855 0.145 -0.249 -- 0.493 0.0812 7.31 1015 3372 -- --
33.27 0.269 2.99 -0.106 0.145 -0.369 -- -- 0.0777 7.27 1016 3375 -- --
34.06 0.272 2.99 -0.0744 -- -0.25 -- 0.502 0.0856 -- 1015 3435 -- --
34.57 0.276 2.99 -0.14 0.143 -- -0.236 -- 0.0518 7.47 -- -- -- --
34.72 0.276 2.99 -0.145 0.142 -- -- -- 0.0521 7.42 -- -- -- --
34.35 0.273 2.99 -0.0972 -- -0.404 -- -- 0.0797 -- 1016 3372 -- --
33.52 0.27 2.99 -- 0.139 -0.43 -- -- 0.0797 7.39 1016 3372 -- --
35.81 0.28 2.99 -0.143 -- -- -- -- 0.0544 -- -- -- -- --
35.28 0.278 2.99 -- 0.141 -- -- -- 0.0683 7.49 -- -- -- --
34.59 0.274 2.99 -- -- -0.435 -- -- 0.0921 -- 1016 3372 -- --
36.35 0.281 2.99 -- -- -- -- -- 0.0703 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 31.16 wind 7.0 10 > th dose dependent rect. 12 2
5 31.48 wind 9.0 90 > th dose independent rect. 13 2
7 31.49 wind 9.0 10 > th dose independent rect. 13 1
37 31.61 humidity 90.0 90 < th dose independent rect. 2 1
39 31.64 atmosphere 1005.0 90 > th dose independent rect. 2 2
41 31.69 atmosphere 1000.0 10 < th dose independent rect. 7 1
48 31.69 atmosphere 1000.0 10 < th dose dependent rect. 7 1
67 31.76 atmosphere 1005.0 90 > th dose dependent rect. 2 2
75 31.89 atmosphere 1005.0 10 > th dose independent rect. 3 1
76 31.90 temperature 20.0 10 < th dose independent rect. 4 1
105 32.49 wind 7.0 10 < th dose independent rect. 5 21
106 32.50 radiation 30.0 10 > th dose independent rect. 13 1
112 32.53 radiation 30.0 90 > th dose dependent rect. 7 1
138 32.67 radiation 30.0 90 > th dose independent rect. 7 1
154 32.68 radiation 1.0 90 < th dose independent rect. 10 1
159 32.68 radiation 1.0 90 < th dose dependent rect. 10 1
172 32.73 humidity 90.0 270 < th dose independent rect. 24 3
183 32.78 radiation 20.0 10 > th dose dependent rect. 13 1
185 32.79 wind 3.0 30 < th dose independent rect. 2 2
186 32.79 radiation 40.0 30 > th dose dependent rect. 13 1
216 32.83 wind 1.0 90 > th dose independent rect. 2 2
219 32.84 humidity 90.0 270 < th dose dependent rect. 24 1
220 32.86 wind 3.0 270 > th dose independent rect. 24 1
243 32.94 temperature 25.0 30 > th dose independent rect. 7 2
245 32.94 atmosphere 995.0 1440 > th dose independent rect. 3 12
258 32.99 atmosphere 1000.0 90 > th dose independent rect. 4 22
260 32.99 temperature 25.0 90 > th dose dependent rect. 3 5
281 33.02 temperature 25.0 90 > th dose dependent rect. 24 8
282 33.02 temperature 25.0 720 > th dose dependent rect. 24 8
298 33.03 temperature 25.0 90 > th dose dependent rect. 6 2
299 33.03 temperature 30.0 10 < th dose dependent rect. 2 3
301 33.04 atmosphere 1015.0 4320 > th dose independent rect. 4 1
303 33.04 atmosphere 1015.0 4320 < th dose independent rect. 5 1
313 33.05 temperature 20.0 90 > th dose independent rect. 2 2
317 33.05 temperature 15.0 90 > th dose independent rect. 4 22
319 33.05 temperature 25.0 10 > th dose dependent rect. 7 2
353 33.08 radiation 10.0 14400 < th dose dependent rect. 12 2
362 33.09 atmosphere 1015.0 4320 > th dose independent rect. 23 11
367 33.09 temperature 30.0 90 < th dose dependent rect. 2 1
393 33.10 temperature 25.0 10 > th dose dependent rect. 24 9
416 33.11 atmosphere 1015.0 4320 > th dose dependent rect. 3 5
419 33.11 atmosphere 1015.0 4320 > th dose dependent rect. 1 9
474 33.13 atmosphere 995.0 1440 > th dose independent rect. 12 18
477 33.13 atmosphere 1015.0 4320 > th dose dependent rect. 7 1
479 33.13 atmosphere 1015.0 4320 > th dose dependent rect. 5 3
487 33.14 atmosphere 1015.0 4320 > th dose independent sin 7 NA
488 33.14 atmosphere 1015.0 4320 < th dose independent sin 7 NA
504 33.14 temperature 25.0 10 > th dose dependent rect. 2 7
514 33.15 precipitation 0.1 90 < th dose independent rect. 2 2
534 33.15 precipitation 0.1 90 < th dose dependent rect. 2 2
540 33.15 atmosphere 1000.0 90 < th dose dependent rect. 6 6
549 33.16 radiation 1.0 10 < th dose independent rect. 7 5
559 33.16 precipitation 0.1 90 < th dose independent rect. 4 22
583 33.16 radiation 1.0 10 < th dose dependent rect. 7 5
602 33.16 wind 9.0 30 < th dose dependent rect. 4 22
603 33.16 precipitation 0.1 90 < th dose dependent rect. 4 22
606 33.17 temperature 10.0 90 > th dose independent rect. 2 2
608 33.17 temperature 30.0 90 < th dose independent rect. 2 2
609 33.17 humidity 50.0 90 > th dose independent rect. 2 2
612 33.17 atmosphere 995.0 90 > th dose independent rect. 2 2
614 33.17 atmosphere 1010.0 90 < th dose independent rect. 2 2
616 33.17 radiation 1.0 90 < th dose independent rect. 2 2
639 33.17 radiation 1.0 90 < th dose dependent rect. 2 2
673 33.18 wind 9.0 30 < th dose dependent rect. 2 2
725 33.19 temperature 25.0 270 > th dose independent rect. 3 5
728 33.19 temperature 15.0 90 > th dose independent rect. 4 7
729 33.19 temperature 15.0 90 > th dose independent rect. 4 9
738 33.19 temperature 10.0 10 > th dose independent rect. 5 21
805 33.20 atmosphere 1015.0 4320 > th dose dependent rect. 9 1
890 33.22 humidity 50.0 90 > th dose independent rect. 4 22
937 33.24 wind 9.0 1440 < th dose independent rect. 3 2
938 33.24 temperature 10.0 1440 > th dose independent rect. 3 2
941 33.24 temperature 30.0 1440 < th dose independent rect. 3 2
945 33.24 humidity 50.0 1440 > th dose independent rect. 3 2
954 33.24 atmosphere 995.0 1440 > th dose independent rect. 3 2
955 33.24 radiation 20.0 1440 < th dose independent rect. 3 2
997 33.24 wind 7.0 10 < th dose independent rect. 5 9
1000 33.24 atmosphere 995.0 1440 > th dose independent rect. 14 16