Os04g0658800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os04g0658800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 129.8 | 0.535 | 9.23 | -0.484 | 1.3 | 1.02 | -0.467 | -3.56 | -0.0697 | 10.2 | 25.72 | 1412 | -- | -- |
| 140.84 | 0.553 | 9.13 | 0.345 | 1.33 | 0.806 | -0.434 | -- | 0.18 | 10 | 22.9 | 9239 | -- | -- |
| 130.66 | 0.532 | 9.23 | -0.481 | 1.3 | 1.02 | -- | -3.48 | -0.0668 | 10.2 | 25.79 | 1413 | -- | -- |
| 140.91 | 0.553 | 9.13 | 0.376 | 1.31 | 0.767 | -- | -- | 0.191 | 10 | 23.1 | 9234 | -- | -- |
| 233.32 | 0.711 | 9.23 | -0.314 | -- | 0.934 | -- | -2.99 | 0.00337 | -- | 25.8 | 1456 | -- | -- |
| 158.22 | 0.59 | 9.05 | 0.852 | 1.27 | -- | -0.326 | -- | 0.538 | 10 | -- | -- | -- | -- |
| 158.63 | 0.59 | 9.05 | 0.839 | 1.27 | -- | -- | -- | 0.537 | 9.98 | -- | -- | -- | -- |
| 231.89 | 0.712 | 9.13 | 0.59 | -- | 0.574 | -- | -- | 0.326 | -- | 23.1 | 10189 | -- | -- |
| 141.78 | 0.555 | 9.13 | -- | 1.29 | 0.902 | -- | -- | 0.174 | 10 | 21.5 | 23637 | -- | -- |
| 255.73 | 0.747 | 9.08 | 0.824 | -- | -- | -- | -- | 0.537 | -- | -- | -- | -- | -- |
| 177.19 | 0.623 | 9.07 | -- | 1.27 | -- | -- | -- | 0.444 | 9.94 | -- | -- | -- | -- |
| 240.54 | 0.725 | 9.15 | -- | -- | 0.657 | -- | -- | 0.234 | -- | 23.1 | 10189 | -- | -- |
| 273.63 | 0.772 | 9.1 | -- | -- | -- | -- | -- | 0.445 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 127.35 | radiation | 1 | 1440 | < th | dose dependent | rect. | 11 | 13 |
| 4 | 127.40 | radiation | 1 | 1440 | < th | dose dependent | rect. | 11 | 17 |
| 8 | 127.44 | radiation | 1 | 1440 | < th | dose dependent | rect. | 11 | 8 |
| 35 | 127.78 | radiation | 1 | 720 | < th | dose independent | rect. | 14 | 13 |
| 51 | 128.07 | radiation | 1 | 720 | < th | dose independent | rect. | 14 | 5 |
| 58 | 128.34 | temperature | 25 | 1440 | > th | dose dependent | rect. | 14 | 1 |
| 71 | 128.71 | radiation | 1 | 1440 | < th | dose dependent | sin | 19 | NA |
| 75 | 128.96 | radiation | 10 | 720 | < th | dose dependent | rect. | 16 | 11 |
| 91 | 129.43 | humidity | 50 | 720 | > th | dose dependent | rect. | 16 | 5 |
| 98 | 129.63 | radiation | 1 | 1440 | < th | dose independent | rect. | 11 | 13 |
| 100 | 129.65 | radiation | 1 | 1440 | < th | dose independent | rect. | 11 | 11 |
| 106 | 129.69 | radiation | 1 | 1440 | < th | dose independent | rect. | 11 | 8 |
| 157 | 130.07 | radiation | 1 | 720 | > th | dose independent | rect. | 12 | 18 |
| 158 | 130.07 | radiation | 1 | 720 | > th | dose independent | rect. | 11 | 20 |
| 165 | 130.16 | temperature | 25 | 1440 | > th | dose dependent | rect. | 12 | 18 |
| 169 | 130.18 | temperature | 25 | 1440 | > th | dose dependent | rect. | 12 | 15 |
| 171 | 130.19 | radiation | 1 | 1440 | > th | dose independent | rect. | 11 | 8 |
| 315 | 131.08 | radiation | 1 | 1440 | < th | dose independent | sin | 18 | NA |
| 332 | 131.22 | temperature | 25 | 1440 | > th | dose dependent | sin | 16 | NA |
| 346 | 131.37 | humidity | 50 | 720 | > th | dose dependent | rect. | 15 | 13 |
| 374 | 131.54 | radiation | 1 | 1440 | > th | dose independent | sin | 18 | NA |
| 387 | 131.57 | temperature | 25 | 1440 | > th | dose independent | rect. | 11 | 12 |
| 399 | 131.59 | humidity | 90 | 43200 | > th | dose dependent | rect. | 23 | 1 |
| 406 | 131.61 | humidity | 50 | 720 | > th | dose dependent | rect. | 16 | 11 |
| 432 | 131.86 | radiation | 1 | 720 | < th | dose dependent | rect. | 23 | 20 |
| 529 | 132.41 | temperature | 25 | 1440 | < th | dose independent | rect. | 11 | 12 |
| 563 | 132.67 | temperature | 25 | 1440 | > th | dose independent | sin | 19 | NA |
| 575 | 132.72 | radiation | 1 | 720 | < th | dose dependent | rect. | 5 | 22 |
| 577 | 132.76 | temperature | 25 | 1440 | < th | dose independent | rect. | 13 | 10 |
| 589 | 132.84 | radiation | 1 | 720 | < th | dose dependent | rect. | 5 | 14 |
| 623 | 133.04 | temperature | 25 | 1440 | > th | dose independent | rect. | 5 | 18 |
| 629 | 133.07 | radiation | 1 | 720 | < th | dose dependent | rect. | 22 | 23 |
| 647 | 133.15 | humidity | 90 | 43200 | > th | dose independent | rect. | 21 | 1 |
| 655 | 133.18 | wind | 7 | 43200 | < th | dose independent | rect. | 17 | 1 |
| 659 | 133.19 | radiation | 1 | 720 | < th | dose independent | rect. | 23 | 20 |
| 660 | 133.19 | temperature | 25 | 1440 | > th | dose independent | rect. | 10 | 21 |
| 665 | 133.22 | temperature | 25 | 1440 | < th | dose independent | sin | 18 | NA |
| 716 | 133.42 | humidity | 90 | 43200 | > th | dose independent | rect. | 21 | 3 |
| 727 | 133.46 | temperature | 25 | 1440 | < th | dose independent | rect. | 5 | 18 |
| 812 | 133.81 | radiation | 1 | 1440 | < th | dose independent | rect. | 14 | 1 |
| 814 | 133.81 | radiation | 1 | 1440 | < th | dose dependent | rect. | 14 | 1 |
| 819 | 133.84 | radiation | 1 | 1440 | > th | dose independent | rect. | 14 | 1 |
| 835 | 133.87 | humidity | 90 | 720 | > th | dose dependent | rect. | 18 | 7 |
| 838 | 133.88 | temperature | 25 | 1440 | > th | dose independent | rect. | 10 | 3 |
| 879 | 133.97 | wind | 7 | 43200 | > th | dose independent | rect. | 13 | 5 |
| 904 | 134.04 | wind | 7 | 43200 | < th | dose independent | rect. | 13 | 5 |
| 914 | 134.08 | temperature | 25 | 1440 | < th | dose independent | rect. | 9 | 22 |
| 918 | 134.09 | humidity | 90 | 43200 | > th | dose dependent | sin | 14 | NA |
| 949 | 134.17 | radiation | 10 | 43200 | < th | dose independent | rect. | 6 | 1 |
| 956 | 134.17 | temperature | 25 | 1440 | > th | dose dependent | rect. | 2 | 19 |
| 969 | 134.19 | temperature | 25 | 1440 | > th | dose independent | rect. | 17 | 23 |
| 980 | 134.21 | radiation | 1 | 43200 | > th | dose dependent | rect. | 5 | 1 |