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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os04g0658700

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Protein kinase-like domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.77 (0.034) R2 : 0.424
β1 : 1.2 (0.124) R2dD : 0.123 R2D : 0.12
β2 : 1.24 (0.0806) R2dC : 0.301 R2C : 0.305
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.129 (0.0724) R2dN8 : 0.00535 R2N8 : -0.00502
σ : 0.638
deviance : 185.45
__
_____
C
peak time of C : 23.3
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = wind, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
173.47 0.613 3.8 1.09 1.23 -0.502 0.76 3.03 0.104 22.9 1 10 -- --
180.09 0.625 3.77 1.11 1.2 -0.313 0.544 -- 0.161 22.7 1.861 16 -- --
175.81 0.618 3.8 1.07 1.23 -0.522 -- 2.72 0.108 22.9 1 9 -- --
181.22 0.627 3.77 1.09 1.21 -0.321 -- -- 0.16 22.7 1.8 16 -- --
268.27 0.763 3.76 1.09 -- -0.683 -- 2.42 0.129 -- 1.09 8 -- --
183.89 0.636 3.77 1.23 1.25 -- 0.603 -- 0.131 23.3 -- -- -- --
185.45 0.638 3.77 1.2 1.24 -- -- -- 0.129 23.3 -- -- -- --
270.56 0.766 3.74 1.05 -- -0.439 -- -- 0.154 -- 1.9 16 -- --
212.53 0.679 3.76 -- 1.26 -0.37 -- -- 0.176 22.6 1.891 18 -- --
281.99 0.785 3.74 1.23 -- -- -- -- 0.14 -- -- -- -- --
223.67 0.7 3.8 -- 1.25 -- -- -- -0.00535 23.3 -- -- -- --
299.05 0.805 3.72 -- -- -0.546 -- -- 0.0926 -- 1.9 16 -- --
322.22 0.838 3.77 -- -- -- -- -- 0.00318 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 166.63 wind 1.0 10 < th dose independent rect. 9 18
3 166.73 temperature 20.0 270 > th dose dependent rect. 23 2
6 167.57 temperature 20.0 90 > th dose dependent rect. 23 5
9 167.99 wind 1.0 10 > th dose independent rect. 1 23
10 167.99 temperature 20.0 270 > th dose dependent rect. 20 7
13 168.32 wind 9.0 270 < th dose dependent rect. 16 11
21 168.78 temperature 20.0 30 > th dose independent rect. 9 19
22 168.78 atmosphere 995.0 30 > th dose independent rect. 3 23
23 168.84 wind 5.0 270 < th dose independent rect. 16 11
25 168.91 temperature 25.0 270 > th dose independent rect. 23 2
29 169.13 wind 1.0 10 < th dose independent rect. 2 1
30 169.19 radiation 40.0 270 < th dose dependent rect. 15 12
31 169.20 wind 9.0 270 < th dose dependent rect. 7 20
36 169.37 temperature 30.0 30 < th dose independent rect. 3 23
46 169.72 wind 5.0 270 < th dose independent rect. 7 20
48 169.75 wind 1.0 10 < th dose independent sin 19 NA
59 169.87 wind 3.0 720 < th dose independent rect. 24 1
64 169.96 wind 3.0 30 < th dose dependent rect. 2 1
66 169.98 wind 9.0 720 < th dose dependent rect. 23 4
73 170.04 radiation 20.0 270 < th dose independent rect. 15 12
79 170.09 wind 1.0 270 > th dose dependent rect. 12 18
80 170.12 temperature 25.0 90 > th dose dependent rect. 1 1
81 170.16 atmosphere 1005.0 30 > th dose dependent rect. 2 1
84 170.23 atmosphere 995.0 270 > th dose independent rect. 6 21
88 170.31 atmosphere 1005.0 30 > th dose independent rect. 2 1
91 170.34 humidity 90.0 90 > th dose independent rect. 9 3
94 170.35 wind 1.0 10 > th dose independent rect. 12 21
95 170.35 humidity 90.0 90 > th dose dependent rect. 9 2
98 170.36 wind 7.0 720 < th dose dependent rect. 24 1
99 170.37 temperature 20.0 30 > th dose independent rect. 2 1
100 170.37 temperature 25.0 30 < th dose independent rect. 2 1
112 170.42 wind 1.0 270 > th dose independent rect. 4 1
126 170.50 humidity 60.0 1440 > th dose independent rect. 4 5
130 170.54 temperature 20.0 90 > th dose independent rect. 19 9
157 170.70 wind 9.0 90 < th dose dependent rect. 9 18
160 170.71 temperature 10.0 30 > th dose independent rect. 2 1
163 170.71 humidity 50.0 30 > th dose independent rect. 2 1
167 170.71 atmosphere 1010.0 30 < th dose independent rect. 2 1
169 170.71 radiation 1.0 30 < th dose independent rect. 2 1
174 170.71 precipitation 0.1 30 < th dose independent rect. 2 1
176 170.71 temperature 10.0 30 > th dose independent rect. 3 23
177 170.71 radiation 1.0 30 < th dose dependent rect. 2 1
182 170.71 precipitation 0.1 30 < th dose dependent rect. 2 1
184 170.72 wind 1.0 270 > th dose independent rect. 3 3
187 170.73 atmosphere 995.0 270 > th dose independent rect. 16 11
190 170.74 wind 1.0 10 > th dose independent rect. 14 19
194 170.77 humidity 50.0 30 > th dose dependent rect. 2 1
201 170.82 temperature 30.0 270 < th dose dependent rect. 21 10
229 170.94 radiation 10.0 270 < th dose independent rect. 3 3
241 171.02 temperature 20.0 90 > th dose independent rect. 23 14
244 171.04 humidity 90.0 90 > th dose dependent rect. 8 9
247 171.05 radiation 10.0 270 < th dose dependent rect. 3 3
248 171.05 wind 1.0 30 < th dose dependent rect. 9 18
249 171.06 wind 5.0 90 < th dose independent rect. 9 19
256 171.10 atmosphere 995.0 90 > th dose independent rect. 9 18
260 171.16 wind 5.0 720 < th dose independent rect. 23 4
266 171.20 temperature 10.0 1440 > th dose independent rect. 4 6
269 171.20 atmosphere 995.0 1440 > th dose independent rect. 4 6
270 171.20 atmosphere 1015.0 1440 < th dose independent rect. 4 6
271 171.20 temperature 10.0 1440 > th dose independent rect. 10 18
283 171.24 radiation 40.0 90 < th dose independent rect. 3 6
291 171.28 atmosphere 1015.0 30 < th dose dependent rect. 2 1
306 171.37 wind 3.0 270 > th dose independent rect. 12 18
307 171.37 atmosphere 1015.0 270 < th dose independent rect. 6 21
317 171.42 atmosphere 1005.0 30 > th dose dependent rect. 24 3
325 171.47 atmosphere 1015.0 90 < th dose independent rect. 9 18
327 171.48 temperature 30.0 30 < th dose dependent rect. 2 1
334 171.55 wind 1.0 90 > th dose independent rect. 3 6
339 171.57 wind 9.0 270 < th dose independent rect. 6 21
346 171.62 radiation 1.0 4320 < th dose dependent rect. 3 1
351 171.63 humidity 60.0 4320 < th dose dependent rect. 8 1
387 171.72 wind 1.0 270 > th dose dependent rect. 1 5
388 171.73 precipitation 0.1 270 < th dose independent rect. 3 13
390 171.73 precipitation 0.1 270 < th dose dependent rect. 3 13
392 171.74 humidity 70.0 90 > th dose independent rect. 3 6
403 171.79 atmosphere 1010.0 270 < th dose independent rect. 3 3
406 171.80 precipitation 0.1 270 < th dose independent rect. 3 3
408 171.80 temperature 15.0 270 > th dose independent rect. 6 21
409 171.80 precipitation 0.1 270 < th dose dependent rect. 3 3
412 171.83 wind 9.0 270 < th dose independent rect. 3 3
413 171.83 temperature 10.0 270 > th dose independent rect. 3 3
415 171.83 temperature 30.0 270 < th dose independent rect. 3 3
416 171.83 humidity 50.0 270 > th dose independent rect. 3 3
419 171.83 atmosphere 995.0 270 > th dose independent rect. 3 3
442 171.89 radiation 10.0 43200 < th dose dependent rect. 3 1
450 171.90 wind 9.0 1440 < th dose independent rect. 3 1
451 171.90 temperature 10.0 1440 > th dose independent rect. 3 1
454 171.90 temperature 30.0 1440 < th dose independent rect. 3 1
458 171.90 humidity 50.0 1440 > th dose independent rect. 3 1
467 171.90 atmosphere 995.0 1440 > th dose independent rect. 3 1
468 171.90 radiation 1.0 1440 < th dose independent rect. 3 1
488 171.90 radiation 10.0 90 < th dose independent rect. 8 1
490 171.90 temperature 10.0 1440 > th dose independent rect. 4 23
507 171.92 temperature 20.0 10 > th dose independent rect. 23 14
553 172.08 temperature 30.0 720 < th dose independent rect. 24 10
579 172.18 temperature 10.0 270 > th dose independent rect. 3 13
580 172.18 atmosphere 1015.0 270 < th dose independent rect. 3 13
589 172.22 humidity 60.0 4320 < th dose independent rect. 8 1
623 172.28 humidity 90.0 30 < th dose independent rect. 3 6
632 172.31 humidity 60.0 1440 > th dose independent rect. 2 7
638 172.33 temperature 30.0 270 < th dose dependent rect. 3 2
641 172.33 wind 1.0 30 > th dose dependent rect. 12 21
655 172.39 precipitation 0.1 90 < th dose independent rect. 3 6
658 172.39 precipitation 0.1 90 < th dose dependent rect. 3 6
707 172.53 wind 9.0 90 < th dose independent rect. 3 6
708 172.53 temperature 10.0 90 > th dose independent rect. 3 6
711 172.53 atmosphere 995.0 90 > th dose independent rect. 3 6
712 172.53 atmosphere 1015.0 90 < th dose independent rect. 3 6
730 172.57 wind 9.0 270 < th dose dependent rect. 22 14
737 172.59 humidity 60.0 270 < th dose dependent rect. 9 1
739 172.60 wind 1.0 10 > th dose independent sin 1 NA
763 172.62 radiation 1.0 30 > th dose independent rect. 12 21
817 172.67 radiation 1.0 270 < th dose independent rect. 6 21
852 172.73 humidity 60.0 1440 > th dose independent rect. 23 10
858 172.76 atmosphere 1015.0 270 < th dose independent rect. 22 14
862 172.78 atmosphere 1015.0 270 < th dose dependent rect. 3 3
864 172.79 temperature 30.0 90 < th dose independent rect. 3 6
873 172.82 temperature 30.0 270 < th dose independent rect. 9 1
875 172.82 wind 7.0 270 < th dose independent rect. 22 13
890 172.85 humidity 70.0 90 > th dose dependent rect. 8 20
929 172.90 wind 1.0 30 > th dose independent rect. 2 1
934 172.90 wind 9.0 270 < th dose independent rect. 3 13
940 172.93 humidity 60.0 270 < th dose independent rect. 8 2
966 172.95 wind 1.0 10 > th dose independent rect. 1 8