Os04g0658100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Histone-fold domain containing protein.
FiT-DB / Search/ Help/ Sample detail
|
Os04g0658100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
|
Description : Histone-fold domain containing protein.
|
|
log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
|
_____ |
|
__
Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 22.02 | 0.22 | 8.79 | 0.342 | 0.359 | 0.41 | 0.293 | 0.113 | 0.2 | 4.95 | 46.66 | 19 | -- | -- |
| 22.06 | 0.219 | 8.79 | 0.336 | 0.361 | 0.401 | 0.306 | -- | 0.198 | 4.85 | 46.56 | 18 | -- | -- |
| 22.22 | 0.22 | 8.79 | 0.343 | 0.363 | 0.4 | -- | 0.176 | 0.198 | 4.84 | 46.66 | 18 | -- | -- |
| 22.32 | 0.22 | 8.79 | 0.339 | 0.365 | 0.397 | -- | -- | 0.197 | 4.83 | 46.48 | 16 | -- | -- |
| 24.05 | 0.228 | 8.79 | 0.344 | -- | 0.476 | -- | 0.239 | 0.205 | -- | 8.572 | 350 | -- | -- |
| 24.74 | 0.233 | 8.8 | 0.332 | 0.527 | -- | 0.254 | -- | 0.186 | 2.9 | -- | -- | -- | -- |
| 24.95 | 0.234 | 8.8 | 0.326 | 0.528 | -- | -- | -- | 0.185 | 2.89 | -- | -- | -- | -- |
| 24.26 | 0.229 | 8.79 | 0.338 | -- | 0.476 | -- | -- | 0.205 | -- | 7.935 | 351 | -- | -- |
| 25.31 | 0.234 | 8.8 | -- | 0.37 | 0.394 | -- | -- | 0.164 | 4.7 | 47.55 | 24 | -- | -- |
| 41.04 | 0.299 | 8.8 | 0.349 | -- | -- | -- | -- | 0.199 | -- | -- | -- | -- | -- |
| 27.76 | 0.246 | 8.81 | -- | 0.534 | -- | -- | -- | 0.149 | 2.89 | -- | -- | -- | -- |
| 27.21 | 0.243 | 8.8 | -- | -- | 0.486 | -- | -- | 0.169 | -- | 9.936 | 348 | -- | -- |
| 44.25 | 0.31 | 8.8 | -- | -- | -- | -- | -- | 0.16 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
|
Histogram 
|
Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 19.18 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 3 | 16 |
| 2 | 19.23 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 4 | 15 |
| 3 | 19.29 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 3 | 14 |
| 12 | 19.89 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 3 | 10 |
| 24 | 20.18 | temperature | 10.0 | 90 | > th | dose dependent | rect. | 6 | 21 |
| 32 | 20.36 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 4 | 10 |
| 33 | 20.36 | temperature | 10.0 | 10 | > th | dose dependent | rect. | 6 | 22 |
| 35 | 20.37 | temperature | 20.0 | 90 | > th | dose dependent | rect. | 24 | 13 |
| 52 | 20.47 | temperature | 30.0 | 90 | < th | dose independent | rect. | 3 | 16 |
| 56 | 20.51 | temperature | 30.0 | 10 | < th | dose dependent | sin | 2 | NA |
| 70 | 20.58 | temperature | 25.0 | 90 | < th | dose independent | rect. | 3 | 14 |
| 71 | 20.58 | temperature | 20.0 | 10 | > th | dose dependent | sin | 3 | NA |
| 72 | 20.59 | temperature | 30.0 | 10 | < th | dose independent | rect. | 4 | 15 |
| 75 | 20.62 | temperature | 25.0 | 270 | > th | dose independent | rect. | 23 | 14 |
| 91 | 20.66 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 3 | 20 |
| 92 | 20.67 | temperature | 10.0 | 10 | > th | dose dependent | sin | 3 | NA |
| 94 | 20.67 | temperature | 20.0 | 10 | > th | dose dependent | rect. | 1 | 13 |
| 118 | 20.74 | temperature | 10.0 | 90 | > th | dose dependent | sin | 4 | NA |
| 149 | 20.83 | temperature | 25.0 | 270 | < th | dose independent | rect. | 1 | 14 |
| 153 | 20.85 | temperature | 25.0 | 90 | < th | dose independent | rect. | 3 | 10 |
| 160 | 20.86 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 21 | 14 |
| 161 | 20.86 | temperature | 10.0 | 10 | > th | dose dependent | rect. | 8 | 19 |
| 167 | 20.88 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 3 | 6 |
| 169 | 20.89 | temperature | 25.0 | 270 | < th | dose independent | rect. | 1 | 10 |
| 176 | 20.91 | temperature | 15.0 | 270 | > th | dose dependent | rect. | 5 | 8 |
| 190 | 20.93 | radiation | 40.0 | 90 | < th | dose dependent | rect. | 3 | 9 |
| 197 | 20.95 | temperature | 25.0 | 90 | < th | dose independent | rect. | 3 | 8 |
| 206 | 20.97 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 3 | 4 |
| 226 | 20.99 | radiation | 40.0 | 30 | < th | dose dependent | rect. | 4 | 15 |
| 246 | 21.02 | temperature | 20.0 | 10 | > th | dose dependent | rect. | 6 | 8 |
| 258 | 21.04 | radiation | 40.0 | 90 | < th | dose independent | rect. | 3 | 16 |
| 275 | 21.06 | radiation | 40.0 | 30 | < th | dose dependent | rect. | 3 | 23 |
| 304 | 21.11 | radiation | 40.0 | 90 | < th | dose dependent | rect. | 3 | 12 |
| 308 | 21.12 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 1 | 5 |
| 316 | 21.13 | temperature | 25.0 | 270 | > th | dose independent | sin | 7 | NA |
| 331 | 21.15 | temperature | 25.0 | 270 | < th | dose independent | sin | 7 | NA |
| 355 | 21.19 | temperature | 20.0 | 10 | > th | dose dependent | rect. | 6 | 10 |
| 360 | 21.20 | radiation | 20.0 | 30 | < th | dose independent | rect. | 3 | 16 |
| 374 | 21.21 | temperature | 20.0 | 90 | > th | dose dependent | rect. | 19 | 18 |
| 396 | 21.24 | radiation | 40.0 | 10 | < th | dose independent | rect. | 4 | 15 |
| 427 | 21.28 | radiation | 30.0 | 270 | < th | dose dependent | rect. | 1 | 12 |
| 442 | 21.29 | temperature | 20.0 | 10 | > th | dose dependent | rect. | 21 | 17 |
| 487 | 21.34 | temperature | 25.0 | 90 | < th | dose independent | rect. | 3 | 6 |
| 507 | 21.36 | temperature | 25.0 | 90 | < th | dose independent | rect. | 3 | 4 |
| 533 | 21.39 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 4 | 4 |
| 536 | 21.39 | radiation | 40.0 | 10 | < th | dose dependent | rect. | 4 | 13 |
| 595 | 21.44 | radiation | 20.0 | 30 | < th | dose independent | rect. | 3 | 23 |
| 619 | 21.46 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 4 | 2 |
| 680 | 21.51 | humidity | 70.0 | 10 | > th | dose independent | rect. | 3 | 16 |
| 688 | 21.51 | humidity | 50.0 | 90 | > th | dose dependent | rect. | 3 | 16 |
| 759 | 21.56 | humidity | 50.0 | 10 | > th | dose dependent | rect. | 4 | 15 |
| 769 | 21.57 | atmosphere | 995.0 | 90 | > th | dose independent | rect. | 3 | 16 |
| 810 | 21.60 | temperature | 25.0 | 270 | < th | dose independent | rect. | 1 | 5 |
| 812 | 21.60 | radiation | 10.0 | 270 | > th | dose independent | rect. | 17 | 20 |
| 813 | 21.60 | radiation | 40.0 | 90 | < th | dose independent | rect. | 3 | 20 |
| 823 | 21.60 | wind | 9.0 | 270 | < th | dose dependent | rect. | 6 | 20 |
| 825 | 21.60 | radiation | 40.0 | 90 | < th | dose dependent | rect. | 3 | 20 |
| 850 | 21.62 | radiation | 20.0 | 30 | < th | dose independent | rect. | 3 | 20 |
| 891 | 21.65 | radiation | 30.0 | 90 | < th | dose independent | rect. | 3 | 9 |
| 916 | 21.66 | wind | 9.0 | 270 | < th | dose dependent | rect. | 6 | 8 |
| 917 | 21.66 | radiation | 10.0 | 14400 | < th | dose dependent | rect. | 20 | 8 |
| 931 | 21.67 | precipitation | 0.1 | 90 | < th | dose independent | rect. | 3 | 16 |
| 947 | 21.67 | precipitation | 0.1 | 90 | < th | dose dependent | rect. | 3 | 16 |