Os04g0657900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os04g0657900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 75.84 | 0.409 | 12.2 | -2.09 | 0.425 | 1.82 | 0.00112 | -3.24 | -0.528 | 2.44 | 16.13 | 731 | -- | -- |
| 82.93 | 0.424 | 12.2 | -1.54 | 0.449 | 1.57 | -0.869 | -- | -0.392 | 22.5 | 15.9 | 1184 | -- | -- |
| 75.79 | 0.405 | 12.2 | -2.1 | 0.418 | 1.8 | -- | -3.24 | -0.53 | 2.45 | 16.45 | 734 | -- | -- |
| 84.42 | 0.428 | 12.1 | -1.47 | 0.404 | 1.84 | -- | -- | -0.355 | 2.21 | 14.6 | 757 | -- | -- |
| 82.31 | 0.423 | 12.2 | -2.17 | -- | 1.87 | -- | -3.13 | -0.56 | -- | 16.65 | 902 | -- | -- |
| 126.54 | 0.527 | 12.1 | -1.02 | 0.626 | -- | -0.708 | -- | -0.0722 | 23.3 | -- | -- | -- | -- |
| 128.63 | 0.531 | 12.1 | -0.994 | 0.629 | -- | -- | -- | -0.0703 | 23.5 | -- | -- | -- | -- |
| 90.67 | 0.443 | 12.1 | -1.52 | -- | 1.97 | -- | -- | -0.381 | -- | 14.62 | 905 | -- | -- |
| 134.45 | 0.54 | 12.1 | -- | 0.461 | 1.2 | -- | -- | -0.11 | 1.11 | 11.59 | 703 | -- | -- |
| 153.48 | 0.579 | 12.1 | -0.976 | -- | -- | -- | -- | -0.0635 | -- | -- | -- | -- | -- |
| 154.64 | 0.582 | 12.1 | -- | 0.618 | -- | -- | -- | 0.0403 | 23.4 | -- | -- | -- | -- |
| 144.75 | 0.56 | 12.1 | -- | -- | 1.38 | -- | -- | -0.132 | -- | 12.69 | 855 | -- | -- |
| 178.63 | 0.624 | 12 | -- | -- | -- | -- | -- | 0.0449 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 72.25 | temperature | 25 | 1440 | > th | dose independent | rect. | 10 | 12 |
| 5 | 72.87 | temperature | 20 | 720 | > th | dose dependent | rect. | 16 | 19 |
| 6 | 72.92 | temperature | 25 | 1440 | < th | dose independent | rect. | 10 | 12 |
| 19 | 73.22 | temperature | 25 | 1440 | < th | dose independent | rect. | 14 | 8 |
| 22 | 73.29 | temperature | 20 | 1440 | > th | dose dependent | rect. | 14 | 16 |
| 25 | 73.33 | temperature | 20 | 720 | > th | dose dependent | rect. | 19 | 16 |
| 29 | 73.40 | temperature | 25 | 1440 | > th | dose independent | rect. | 14 | 8 |
| 44 | 73.60 | temperature | 25 | 1440 | > th | dose independent | sin | 18 | NA |
| 49 | 73.62 | temperature | 20 | 720 | > th | dose dependent | sin | 9 | NA |
| 52 | 73.65 | temperature | 30 | 720 | < th | dose dependent | rect. | 15 | 20 |
| 58 | 73.71 | temperature | 25 | 1440 | < th | dose independent | sin | 18 | NA |
| 61 | 73.73 | temperature | 20 | 1440 | > th | dose dependent | sin | 15 | NA |
| 139 | 74.34 | temperature | 30 | 720 | < th | dose dependent | rect. | 20 | 21 |
| 148 | 74.43 | temperature | 20 | 1440 | > th | dose dependent | rect. | 17 | 5 |
| 168 | 74.59 | temperature | 15 | 720 | > th | dose dependent | rect. | 21 | 21 |
| 230 | 74.93 | temperature | 15 | 720 | > th | dose dependent | rect. | 23 | 19 |
| 258 | 75.07 | temperature | 15 | 720 | > th | dose dependent | rect. | 23 | 21 |
| 371 | 75.57 | temperature | 30 | 1440 | < th | dose dependent | rect. | 17 | 1 |
| 381 | 75.64 | temperature | 30 | 1440 | < th | dose dependent | rect. | 12 | 17 |
| 414 | 75.82 | temperature | 25 | 1440 | > th | dose independent | rect. | 3 | 19 |
| 439 | 75.92 | temperature | 30 | 1440 | < th | dose dependent | rect. | 13 | 11 |
| 442 | 75.93 | temperature | 25 | 1440 | < th | dose independent | rect. | 3 | 19 |
| 482 | 76.05 | temperature | 30 | 1440 | < th | dose dependent | rect. | 14 | 8 |
| 513 | 76.14 | temperature | 30 | 1440 | < th | dose dependent | sin | 16 | NA |
| 618 | 76.47 | temperature | 15 | 720 | > th | dose dependent | no | NA | NA |
| 624 | 76.50 | temperature | 30 | 1440 | < th | dose dependent | rect. | 17 | 4 |
| 651 | 76.57 | temperature | 20 | 1440 | > th | dose dependent | rect. | 1 | 23 |
| 700 | 76.66 | temperature | 25 | 1440 | > th | dose independent | rect. | 10 | 3 |
| 752 | 76.76 | temperature | 10 | 720 | > th | dose dependent | rect. | 6 | 23 |
| 868 | 77.02 | temperature | 30 | 720 | < th | dose dependent | sin | 10 | NA |
| 893 | 77.07 | temperature | 30 | 720 | < th | dose dependent | no | NA | NA |
| 944 | 77.17 | temperature | 10 | 720 | > th | dose dependent | rect. | 4 | 23 |
| 989 | 77.25 | temperature | 30 | 720 | < th | dose dependent | rect. | 24 | 23 |