Os04g0655400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os04g0655400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = > th, dose dependency = dose independent, type of G = sin)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 277.65 | 0.783 | 3.93 | 2.16 | 1.69 | -1.98 | 4.67 | -2.58 | 0.945 | 19.3 | 0.9689 | 17198 | 7.75 | -- |
| 271.35 | 0.767 | 3.86 | 3.49 | 1.71 | -2.13 | 4.6 | -- | 1.33 | 19.1 | 0.84 | 21516 | 7.25 | -- |
| 328.1 | 0.844 | 3.94 | 2.13 | 1.71 | -2 | -- | -2.55 | 1.04 | 19.3 | 0.98 | 21515 | 7.79 | -- |
| 324.85 | 0.839 | 3.84 | 3.4 | 1.7 | -2.11 | -- | -- | 1.37 | 19.2 | 0.78 | 22967 | 7.46 | -- |
| 427.23 | 0.963 | 3.86 | 2.92 | -- | -1.73 | -- | -3.81 | 0.931 | -- | -8.398e-05 | 21319 | 8.63 | -- |
| 405.07 | 0.944 | 4.02 | 2.55 | 1.72 | -- | 4.79 | -- | 0.466 | 19 | -- | -- | -- | -- |
| 464.77 | 1.01 | 4.02 | 2.46 | 1.73 | -- | -- | -- | 0.477 | 19.1 | -- | -- | -- | -- |
| 464.77 | 1 | 3.97 | 2.46 | -- | -1.73 | -- | -- | 0.482 | -- | -2.269 | 20508 | 1.83 | -- |
| 492.09 | 1.03 | 3.94 | -- | 1.67 | -1.84 | -- | -- | 0.873 | 18.9 | 3.761 | 20160 | 7.74 | -- |
| 622.31 | 1.17 | 3.98 | 2.43 | -- | -- | -- | -- | 0.446 | -- | -- | -- | -- | -- |
| 624.59 | 1.17 | 4.08 | -- | 1.7 | -- | -- | -- | 0.203 | 19.2 | -- | -- | -- | -- |
| 624.59 | 1.16 | 4.03 | -- | -- | -1.7 | -- | -- | 0.203 | -- | -2.433 | 20525 | 1.88 | -- |
| 777.9 | 1.3 | 4.04 | -- | -- | -- | -- | -- | 0.176 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 267.76 | humidity | 80.0 | 43200 | > th | dose dependent | rect. | 18 | 5 |
| 4 | 268.54 | humidity | 90.0 | 43200 | > th | dose independent | rect. | 20 | 1 |
| 5 | 269.08 | humidity | 90.0 | 43200 | < th | dose independent | rect. | 19 | 4 |
| 32 | 270.67 | humidity | 80.0 | 43200 | > th | dose dependent | rect. | 18 | 1 |
| 33 | 270.68 | humidity | 90.0 | 43200 | > th | dose dependent | rect. | 20 | 1 |
| 44 | 270.94 | humidity | 80.0 | 43200 | < th | dose independent | rect. | 13 | 5 |
| 47 | 271.13 | humidity | 80.0 | 43200 | > th | dose independent | rect. | 14 | 4 |
| 48 | 271.14 | humidity | 80.0 | 43200 | > th | dose independent | rect. | 12 | 7 |
| 101 | 272.53 | humidity | 80.0 | 43200 | < th | dose independent | rect. | 16 | 1 |
| 104 | 272.62 | humidity | 80.0 | 43200 | > th | dose dependent | rect. | 10 | 14 |
| 130 | 273.01 | humidity | 80.0 | 43200 | > th | dose dependent | sin | 18 | NA |
| 271 | 275.33 | humidity | 90.0 | 43200 | < th | dose independent | sin | 17 | NA |
| 311 | 275.76 | humidity | 90.0 | 43200 | < th | dose independent | rect. | 7 | 19 |
| 360 | 276.17 | temperature | 25.0 | 14400 | < th | dose dependent | rect. | 5 | 1 |
| 365 | 276.25 | humidity | 90.0 | 43200 | > th | dose independent | rect. | 5 | 21 |
| 386 | 276.46 | humidity | 90.0 | 43200 | > th | dose independent | rect. | 9 | 17 |
| 397 | 276.53 | humidity | 90.0 | 43200 | > th | dose independent | rect. | 11 | 15 |
| 413 | 276.65 | humidity | 80.0 | 43200 | > th | dose independent | sin | 21 | NA |
| 415 | 276.67 | temperature | 10.0 | 14400 | > th | dose dependent | rect. | 5 | 1 |
| 422 | 276.75 | humidity | 90.0 | 43200 | > th | dose independent | sin | 17 | NA |
| 435 | 276.79 | humidity | 90.0 | 43200 | > th | dose independent | rect. | 18 | 18 |
| 437 | 276.81 | humidity | 70.0 | 43200 | > th | dose dependent | rect. | 13 | 1 |
| 446 | 276.85 | humidity | 90.0 | 43200 | > th | dose independent | rect. | 18 | 16 |
| 456 | 276.92 | radiation | 1.0 | 43200 | < th | dose independent | rect. | 17 | 1 |
| 478 | 277.04 | humidity | 90.0 | 43200 | < th | dose independent | rect. | 18 | 18 |
| 571 | 277.48 | radiation | 1.0 | 43200 | > th | dose independent | rect. | 17 | 1 |
| 581 | 277.49 | humidity | 90.0 | 43200 | > th | dose dependent | rect. | 6 | 1 |
| 589 | 277.51 | humidity | 90.0 | 43200 | > th | dose dependent | rect. | 5 | 5 |
| 623 | 277.65 | temperature | 25.0 | 14400 | < th | dose dependent | rect. | 2 | 4 |
| 662 | 277.84 | temperature | 10.0 | 14400 | > th | dose dependent | rect. | 2 | 1 |
| 663 | 277.84 | temperature | 30.0 | 14400 | < th | dose dependent | rect. | 2 | 1 |
| 680 | 277.88 | temperature | 10.0 | 14400 | > th | dose dependent | rect. | 2 | 4 |
| 691 | 277.93 | humidity | 90.0 | 43200 | > th | dose independent | rect. | 1 | 23 |
| 731 | 278.04 | humidity | 90.0 | 43200 | > th | dose independent | rect. | 11 | 23 |
| 738 | 278.07 | humidity | 90.0 | 43200 | < th | dose independent | no | NA | NA |
| 750 | 278.12 | humidity | 90.0 | 43200 | > th | dose independent | no | NA | NA |
| 755 | 278.14 | humidity | 90.0 | 43200 | < th | dose independent | rect. | 11 | 23 |
| 761 | 278.18 | humidity | 90.0 | 43200 | > th | dose independent | rect. | 9 | 23 |
| 767 | 278.20 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 16 | 2 |
| 774 | 278.23 | humidity | 90.0 | 43200 | < th | dose independent | rect. | 9 | 23 |
| 779 | 278.25 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 16 | 2 |
| 782 | 278.25 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 16 | 2 |
| 817 | 278.36 | radiation | 40.0 | 14400 | < th | dose dependent | rect. | 4 | 2 |
| 878 | 278.57 | humidity | 90.0 | 43200 | > th | dose dependent | rect. | 17 | 20 |
| 903 | 278.65 | radiation | 1.0 | 43200 | < th | dose independent | rect. | 17 | 3 |
| 932 | 278.70 | humidity | 90.0 | 43200 | > th | dose independent | rect. | 4 | 6 |
| 938 | 278.71 | radiation | 10.0 | 14400 | < th | dose dependent | rect. | 1 | 5 |
| 1000 | 278.88 | radiation | 10.0 | 14400 | < th | dose dependent | rect. | 23 | 7 |