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Os04g0655300

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Protein kinase-like domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 7.43 (0.0527) R2 : 0.00651
β1 : 2.76 (0.223) R2dD : 0.0908 R2D : 0.112
β2 : 0.604 (0.137) R2dC : 0.0346 R2C : 0.0147
β3 : -1.23 (0.201) R2dE : -0.0796 R2E : 0.0562
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : 8.51 (1.19) R2dD*E : -0.161 R2D*E : -0.0786
γ1 : 0.367 (0.112) R2dN8 : 0.0136 R2N8 : -0.00603
σ : 0.975
deviance : 437.9
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_____
C
peak time of C : 18.5
E
wheather : radiation
threshold : 20
memory length : 1570
response mode : > th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 16
open length of G : 15.2

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = > th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
438.86 0.976 7.43 2.71 0.604 -1.23 0.786 8.11 0.367 18.5 20 1570 16 15.1
473.73 1.01 7.41 2.49 0.633 -1.1 0.08 -- 0.325 18.3 22.46 1922 16.6 14.7
437.9 0.975 7.43 2.76 0.604 -1.23 -- 8.51 0.367 18.5 20 1570 16 15.2
467.66 1.01 7.45 2.53 0.597 -1.35 -- -- 0.362 18.1 25.92 1907 16.2 15.5
460.76 1 7.43 2.82 -- -1.19 -- 8.51 0.367 -- 20 1570 16 15.2
507.27 1.06 7.45 2.01 0.542 -- 1.03 -- 0.347 18.3 -- -- -- --
509.55 1.06 7.45 1.99 0.551 -- -- -- 0.35 18.8 -- -- -- --
471.92 1.01 7.39 2 -- -2.04 -- -- 0.405 -- 25.32 1877 16.7 14.4
496.32 1.04 7.45 -- 0.479 -2.29 -- -- 0.268 17.8 26.32 1911 16.2 15.5
525.44 1.07 7.44 1.98 -- -- -- -- 0.339 -- -- -- -- --
614.23 1.16 7.5 -- 0.528 -- -- -- 0.128 19 -- -- -- --
507.08 1.05 7.46 -- -- -2.92 -- -- 0.246 -- 26.33 1912 16.1 15.5
628.94 1.17 7.49 -- -- -- -- -- 0.119 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 454.87 radiation 20 1440 > th dose independent rect. 16 15
2 456.42 radiation 20 1440 > th dose independent rect. 16 1
16 458.47 wind 3 4320 > th dose dependent rect. 15 1
17 458.94 wind 1 14400 < th dose independent rect. 1 2
19 460.57 wind 5 4320 > th dose independent rect. 15 1
20 460.60 radiation 20 1440 > th dose dependent rect. 16 15
21 460.88 wind 1 14400 > th dose independent rect. 1 2
22 461.05 radiation 20 1440 < th dose dependent rect. 15 2
24 461.10 wind 9 4320 < th dose dependent rect. 15 1
27 462.06 radiation 20 1440 > th dose dependent rect. 16 1
41 462.47 wind 5 4320 < th dose independent rect. 15 1
43 462.86 atmosphere 1005 30 < th dose independent rect. 13 19
61 463.39 radiation 1 1440 > th dose dependent rect. 16 1
65 463.71 atmosphere 1005 270 < th dose independent rect. 12 19
66 463.87 wind 9 30 > th dose dependent rect. 17 21
72 464.07 wind 5 4320 < th dose independent rect. 14 3
94 465.74 wind 9 30 > th dose dependent rect. 11 9
99 465.88 wind 9 30 > th dose dependent rect. 11 7
116 465.98 radiation 30 1440 < th dose dependent rect. 15 8
118 466.02 radiation 30 1440 < th dose dependent rect. 15 6
123 466.15 radiation 30 1440 < th dose dependent rect. 15 10
124 466.17 radiation 30 1440 < th dose dependent rect. 15 12
137 466.34 humidity 70 1440 > th dose independent rect. 19 12
138 466.47 atmosphere 1015 10 < th dose dependent rect. 13 9
193 467.13 wind 1 30 > th dose independent rect. 1 8
230 467.69 wind 7 30 < th dose independent rect. 13 9
238 467.78 wind 9 270 < th dose independent rect. 10 23
240 467.81 wind 9 30 > th dose dependent sin 22 NA
256 468.26 radiation 20 1440 < th dose independent rect. 15 2
335 468.87 wind 9 10 > th dose independent rect. 13 5
362 469.43 radiation 40 10 < th dose independent rect. 23 23
368 469.61 atmosphere 1010 90 < th dose dependent rect. 12 21
372 469.71 wind 9 30 > th dose dependent no NA NA
413 469.71 wind 9 30 > th dose dependent rect. 13 23
421 469.80 wind 9 30 > th dose dependent rect. 19 23
435 470.01 wind 9 10 > th dose dependent rect. 13 5
456 470.31 radiation 20 1440 < th dose independent rect. 15 8
460 470.35 radiation 20 1440 < th dose independent rect. 15 6
464 470.37 radiation 20 1440 < th dose independent rect. 15 15
468 470.44 radiation 20 1440 < th dose independent rect. 15 10
469 470.45 radiation 20 1440 < th dose independent rect. 15 12
503 470.72 temperature 30 270 < th dose independent rect. 7 16
513 470.89 humidity 60 14400 > th dose independent rect. 21 9
515 470.93 wind 9 30 > th dose independent rect. 11 9
517 470.97 humidity 70 1440 < th dose independent rect. 18 14
566 471.75 radiation 20 1440 > th dose independent sin 13 NA
575 471.86 humidity 90 270 < th dose independent rect. 7 16
600 472.11 radiation 1 720 > th dose independent rect. 7 11
634 472.45 humidity 70 1440 > th dose independent rect. 19 4
635 472.46 wind 9 720 > th dose dependent rect. 11 2
637 472.54 humidity 70 1440 > th dose independent rect. 19 2
640 472.55 wind 1 4320 < th dose dependent rect. 6 1
681 472.83 radiation 1 720 > th dose independent rect. 7 22
710 472.98 humidity 70 1440 > th dose independent rect. 19 6
712 473.01 humidity 70 1440 > th dose independent rect. 19 8
721 473.08 wind 9 90 > th dose independent rect. 11 12
740 473.28 humidity 90 270 < th dose dependent rect. 20 14
742 473.31 humidity 70 1440 < th dose independent sin 10 NA
751 473.39 wind 9 90 > th dose independent rect. 11 23
752 473.40 humidity 80 1440 < th dose dependent sin 10 NA
754 473.41 humidity 80 1440 < th dose dependent rect. 15 21
773 473.43 wind 9 720 > th dose independent rect. 11 2
776 473.44 wind 9 30 < th dose independent rect. 23 23
874 473.54 humidity 70 1440 > th dose independent rect. 18 19
875 473.55 atmosphere 1005 270 > th dose independent rect. 15 21
881 473.63 humidity 90 270 < th dose independent rect. 5 19
889 473.72 wind 9 270 > th dose dependent rect. 19 22
893 473.78 wind 1 4320 < th dose independent rect. 6 1
918 473.90 wind 9 30 < th dose independent sin 22 NA
924 473.93 radiation 1 270 < th dose independent rect. 23 19
931 473.98 wind 9 30 > th dose independent sin 20 NA
933 473.98 wind 9 270 > th dose dependent rect. 16 23
991 474.26 wind 7 30 < th dose independent rect. 13 7