Os04g0654600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein kinase-like domain containing protein.
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Os04g0654600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein kinase-like domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = wind,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 106.29 | 0.484 | 2.82 | 0.147 | 0.13 | 0.941 | -0.306 | 1.42 | -0.0292 | 10.1 | 2.065 | 1396 | -- | -- |
| 107.18 | 0.482 | 2.79 | 0.134 | 0.142 | 0.874 | -0.371 | -- | -0.0205 | 10.3 | 1 | 1363 | -- | -- |
| 106.61 | 0.481 | 2.82 | 0.131 | 0.126 | 0.929 | -- | 1.51 | -0.031 | 9.52 | 2.223 | 1396 | -- | -- |
| 107.63 | 0.483 | 2.8 | 0.102 | 0.145 | 0.823 | -- | -- | -0.0223 | 9.18 | 0.8 | 1391 | -- | -- |
| 107.67 | 0.483 | 2.83 | 0.126 | -- | 0.901 | -- | 1.6 | -0.0272 | -- | 2.215 | 1396 | -- | -- |
| 113.21 | 0.499 | 2.79 | -0.0891 | 0.107 | -- | -0.194 | -- | 0.00385 | 9.01 | -- | -- | -- | -- |
| 113.28 | 0.498 | 2.79 | -0.0972 | 0.116 | -- | -- | -- | 0.00287 | 7.94 | -- | -- | -- | -- |
| 108.78 | 0.486 | 2.8 | 0.0891 | -- | 0.775 | -- | -- | -0.0236 | -- | 0.9998 | 1391 | -- | -- |
| 107.84 | 0.484 | 2.8 | -- | 0.142 | 0.767 | -- | -- | -0.0301 | 8.97 | 1.173 | 1391 | -- | -- |
| 114.01 | 0.499 | 2.8 | -0.096 | -- | -- | -- | -- | 0.00439 | -- | -- | -- | -- | -- |
| 113.53 | 0.498 | 2.79 | -- | 0.115 | -- | -- | -- | 0.0137 | 8 | -- | -- | -- | -- |
| 108.96 | 0.486 | 2.8 | -- | -- | 0.721 | -- | -- | -0.0303 | -- | 1 | 1391 | -- | -- |
| 114.26 | 0.499 | 2.79 | -- | -- | -- | -- | -- | 0.015 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 99.61 | wind | 3.0 | 270 | > th | dose dependent | rect. | 1 | 8 |
| 4 | 100.35 | wind | 5.0 | 270 | > th | dose independent | rect. | 24 | 9 |
| 5 | 100.36 | wind | 5.0 | 270 | > th | dose independent | rect. | 1 | 7 |
| 6 | 100.58 | wind | 3.0 | 90 | > th | dose dependent | rect. | 4 | 5 |
| 11 | 100.87 | wind | 5.0 | 270 | > th | dose dependent | rect. | 2 | 5 |
| 22 | 101.33 | wind | 5.0 | 90 | > th | dose independent | rect. | 4 | 5 |
| 26 | 101.49 | wind | 3.0 | 270 | > th | dose dependent | rect. | 5 | 1 |
| 32 | 101.74 | precipitation | 0.1 | 270 | > th | dose independent | rect. | 5 | 1 |
| 34 | 101.74 | precipitation | 0.1 | 270 | > th | dose dependent | rect. | 5 | 1 |
| 40 | 101.99 | wind | 5.0 | 270 | > th | dose independent | rect. | 5 | 1 |
| 75 | 102.65 | wind | 3.0 | 90 | > th | dose independent | rect. | 4 | 3 |
| 101 | 103.10 | precipitation | 0.1 | 90 | > th | dose independent | rect. | 4 | 12 |
| 123 | 103.36 | precipitation | 0.1 | 10 | > th | dose independent | rect. | 4 | 4 |
| 143 | 103.36 | wind | 3.0 | 10 | > th | dose dependent | rect. | 6 | 1 |
| 220 | 103.40 | wind | 3.0 | 10 | > th | dose independent | rect. | 6 | 1 |
| 258 | 103.60 | wind | 3.0 | 90 | > th | dose dependent | rect. | 2 | 1 |
| 283 | 103.85 | precipitation | 0.1 | 270 | > th | dose independent | rect. | 1 | 5 |
| 286 | 103.86 | precipitation | 0.1 | 270 | > th | dose dependent | rect. | 1 | 5 |
| 297 | 103.97 | precipitation | 0.1 | 270 | > th | dose independent | rect. | 1 | 8 |
| 298 | 103.97 | precipitation | 0.1 | 270 | > th | dose dependent | rect. | 1 | 8 |
| 309 | 104.08 | wind | 5.0 | 90 | > th | dose independent | rect. | 2 | 1 |
| 399 | 104.74 | wind | 3.0 | 270 | > th | dose dependent | sin | 9 | NA |
| 415 | 104.82 | wind | 3.0 | 1440 | > th | dose dependent | rect. | 22 | 17 |
| 428 | 104.87 | wind | 5.0 | 1440 | > th | dose independent | rect. | 21 | 17 |
| 429 | 104.87 | wind | 5.0 | 1440 | < th | dose independent | rect. | 21 | 18 |
| 430 | 104.87 | temperature | 20.0 | 270 | < th | dose dependent | rect. | 6 | 1 |
| 480 | 105.03 | wind | 5.0 | 720 | > th | dose independent | rect. | 19 | 14 |
| 507 | 105.13 | wind | 5.0 | 270 | > th | dose independent | sin | 9 | NA |
| 509 | 105.13 | wind | 3.0 | 270 | < th | dose independent | rect. | 22 | 13 |
| 544 | 105.23 | wind | 3.0 | 90 | > th | dose independent | rect. | 19 | 16 |
| 550 | 105.26 | wind | 5.0 | 270 | < th | dose independent | sin | 9 | NA |
| 553 | 105.27 | radiation | 1.0 | 10 | < th | dose independent | rect. | 6 | 1 |
| 566 | 105.29 | wind | 3.0 | 270 | > th | dose independent | rect. | 17 | 17 |
| 570 | 105.30 | wind | 9.0 | 1440 | < th | dose dependent | rect. | 22 | 17 |
| 588 | 105.37 | wind | 5.0 | 720 | < th | dose independent | rect. | 19 | 14 |
| 607 | 105.40 | wind | 3.0 | 1440 | > th | dose dependent | sin | 7 | NA |
| 645 | 105.50 | wind | 5.0 | 1440 | < th | dose independent | sin | 7 | NA |
| 650 | 105.51 | wind | 5.0 | 1440 | > th | dose independent | sin | 7 | NA |
| 692 | 105.56 | wind | 5.0 | 270 | < th | dose dependent | rect. | 22 | 15 |
| 724 | 105.62 | wind | 9.0 | 4320 | < th | dose independent | rect. | 21 | 1 |
| 830 | 105.80 | atmosphere | 1010.0 | 270 | > th | dose independent | rect. | 24 | 6 |
| 916 | 105.91 | wind | 5.0 | 1440 | < th | dose independent | rect. | 10 | 4 |
| 929 | 105.92 | wind | 9.0 | 1440 | < th | dose dependent | sin | 6 | NA |
| 931 | 105.93 | wind | 5.0 | 1440 | > th | dose independent | rect. | 10 | 4 |
| 941 | 105.94 | wind | 5.0 | 720 | < th | dose independent | rect. | 21 | 10 |
| 958 | 105.96 | atmosphere | 1015.0 | 1440 | > th | dose independent | rect. | 1 | 10 |
| 975 | 105.98 | wind | 3.0 | 90 | > th | dose independent | rect. | 8 | 1 |
| 976 | 105.98 | atmosphere | 1010.0 | 270 | > th | dose independent | rect. | 5 | 1 |