Os04g0654500 - FiT-DB

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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os04g0654500

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.

log2(Expression) ~ Norm(μ, σ²)

μ = α + β₁D + β₂C + β₃E + β₄D*C + β₅D*E + γ₁N8

par.		value	(S.E.)
α	:	5.51	(0.0457)	R²	:	0.718
β₁	:	3.25	(0.173)	R²_dD	:	0.265	R²_D	:	0.0732
β₂	:	3.19	(0.114)	R²_dC	:	0.539	R²_C	:	0.303
β₃	:	-4.62	(0.222)	R²_dE	:	0.328	R²_E	:	-0.0786
β₄	:	--	(--)	R²_dD*C	:	--	R²_D*C	:	--
β₅	:	--	(--)	R²_dD*E	:	--	R²_D*E	:	--
γ₁	:	0.731	(0.102)	R²_dN8	:	0.0515	R²_N8	:	-0.0621
σ	:	0.84
deviance	:	325.57
__

_____

C
peak time of C	:	14.2
E
wheather	:	temperature
threshold	:	3.711
memory length	:	828
response mode	:	> th
dose dependency	:	dose dependent
G
type of G	:	rect.
peak or start time of G	:	16.8
open length of G	:	20.4

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = rect.)

deviance	σ	α	β₁	β₂	β₃	β₄	β₅	γ₁	peak time of C	threshold	memory length	peak or start time of G	open length of G
333.08	0.857	5.5	3.38	3.02	-4.11	0.213	0.0373	0.775	15.5	8.532	785	16.6	21.7
329.75	0.846	5.51	3.31	2.88	-4.23	0.173	--	0.774	15.1	6.798	842	16.1	21.2
332.81	0.85	5.51	3.41	3.01	-4.16	--	0.224	0.8	15.4	8.238	789	16.6	21.5
325.57	0.84	5.51	3.25	3.19	-4.62	--	--	0.731	14.2	3.711	828	16.8	20.4
363.86	0.888	5.42	3.87	--	-5.39	--	2.4	0.907	--	-0.8322	1846	17.1	14.5
572.27	1.12	5.67	2.28	2.87	--	0.0342	--	0.0725	15.7	--	--	--	--
572.28	1.12	5.67	2.28	2.87	--	--	--	0.0727	15.7	--	--	--	--
349.4	0.871	5.51	3.47	--	-5.54	--	--	0.725	--	-10.61	2071	13.7	18
590.55	1.13	5.61	--	3.08	-3.26	--	--	0.223	14.3	-3.571	807	16.8	20.7
1027.86	1.5	5.66	2.16	--	--	--	--	-0.00356	--	--	--	--	--
709.33	1.25	5.72	--	2.82	--	--	--	-0.181	15.7	--	--	--	--
605.76	1.15	5.58	--	--	-3.93	--	--	0.389	--	-26.81	1685	18.4	13.8
1151	1.58	5.72	--	--	--	--	--	-0.243	--	--	--	--	--

Results of the grid search

Summarized heatmap of deviance

Histogram

Local optima within top1000 grid-points

rank	deviance	wheather	threshold	memory length	response mode	dose dependency	type of G	peak or start time of G	open length of G
1	340.59	temperature	10	720	> th	dose dependent	rect.	17	22
8	344.60	temperature	10	720	> th	dose dependent	rect.	12	21
9	345.15	temperature	15	1440	> th	dose dependent	rect.	17	2
16	345.98	temperature	30	1440	< th	dose dependent	rect.	17	2
20	346.22	temperature	10	270	> th	dose dependent	rect.	1	22
22	346.41	temperature	10	720	> th	dose dependent	rect.	12	19
26	346.65	temperature	20	1440	> th	dose dependent	rect.	15	6
27	346.74	temperature	20	1440	> th	dose dependent	rect.	12	16
29	346.91	temperature	20	1440	> th	dose dependent	rect.	12	19
43	347.58	temperature	10	1440	> th	dose dependent	rect.	15	6
77	348.15	temperature	20	1440	> th	dose dependent	sin	16	NA
104	348.72	temperature	30	720	< th	dose dependent	rect.	16	19
223	350.97	temperature	10	720	> th	dose dependent	rect.	17	16
286	351.72	temperature	10	1440	> th	dose dependent	rect.	2	19
448	352.97	temperature	20	1440	> th	dose dependent	no	NA	NA
451	352.98	temperature	20	1440	> th	dose dependent	rect.	6	23