Os04g0654400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Eggshell protein family protein.
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Os04g0654400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Eggshell protein family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 247.98 | 0.74 | 3.09 | 1.09 | 0.859 | -1.26 | 1.13 | -0.96 | 0.174 | 22.6 | 20.43 | 861 | -- | -- |
| 248.56 | 0.734 | 3.06 | 1.31 | 0.855 | -1.3 | 0.951 | -- | 0.236 | 22.7 | 20.6 | 886 | -- | -- |
| 252.28 | 0.74 | 3.06 | 1.27 | 0.838 | -1.28 | -- | -0.015 | 0.231 | 22.9 | 20.37 | 895 | -- | -- |
| 252.28 | 0.74 | 3.06 | 1.27 | 0.842 | -1.28 | -- | -- | 0.231 | 22.9 | 20.38 | 892 | -- | -- |
| 272.85 | 0.769 | 3.06 | 1.22 | -- | -1.01 | -- | -0.425 | 0.205 | -- | 19.78 | 1592 | -- | -- |
| 287.26 | 0.795 | 3.11 | 0.925 | 0.531 | -- | 0.727 | -- | -0.0111 | 23.2 | -- | -- | -- | -- |
| 289.49 | 0.797 | 3.11 | 0.895 | 0.528 | -- | -- | -- | -0.0143 | 23.4 | -- | -- | -- | -- |
| 273.26 | 0.77 | 3.04 | 1.31 | -- | -1.08 | -- | -- | 0.242 | -- | 19.7 | 1594 | -- | -- |
| 289.77 | 0.793 | 3.11 | -- | 0.769 | -0.891 | -- | -- | 0.013 | 23 | 22.3 | 887 | -- | -- |
| 306.94 | 0.819 | 3.1 | 0.908 | -- | -- | -- | -- | -0.00898 | -- | -- | -- | -- | -- |
| 310.58 | 0.824 | 3.13 | -- | 0.537 | -- | -- | -- | -0.114 | 23.5 | -- | -- | -- | -- |
| 306.95 | 0.819 | 3.09 | -- | -- | -0.953 | -- | -- | 0.0233 | -- | 19.7 | 1594 | -- | -- |
| 328.7 | 0.846 | 3.12 | -- | -- | -- | -- | -- | -0.11 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 245.04 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 17 | 4 |
| 2 | 245.06 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 17 | 6 |
| 5 | 245.11 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 17 | 2 |
| 6 | 245.15 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 17 | 12 |
| 8 | 245.21 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 17 | 9 |
| 24 | 246.26 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 20 | 2 |
| 25 | 246.31 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 17 | 4 |
| 28 | 246.38 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 17 | 2 |
| 31 | 246.46 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 17 | 12 |
| 32 | 246.48 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 17 | 9 |
| 48 | 247.00 | temperature | 20.0 | 1440 | > th | dose dependent | rect. | 3 | 1 |
| 51 | 247.14 | radiation | 1.0 | 1440 | < th | dose independent | sin | 17 | NA |
| 59 | 247.22 | temperature | 20.0 | 1440 | > th | dose dependent | rect. | 2 | 5 |
| 60 | 247.24 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 3 | 19 |
| 66 | 247.41 | wind | 1.0 | 43200 | < th | dose dependent | rect. | 19 | 2 |
| 68 | 247.45 | radiation | 40.0 | 1440 | < th | dose dependent | rect. | 16 | 5 |
| 70 | 247.47 | radiation | 40.0 | 1440 | < th | dose dependent | rect. | 16 | 1 |
| 71 | 247.48 | radiation | 40.0 | 1440 | < th | dose dependent | rect. | 16 | 7 |
| 73 | 247.51 | temperature | 10.0 | 1440 | > th | dose dependent | rect. | 17 | 1 |
| 94 | 247.65 | radiation | 40.0 | 1440 | < th | dose dependent | rect. | 16 | 3 |
| 104 | 247.71 | radiation | 1.0 | 1440 | > th | dose dependent | rect. | 16 | 1 |
| 112 | 247.74 | radiation | 40.0 | 1440 | < th | dose dependent | rect. | 16 | 13 |
| 129 | 247.91 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 20 | 1 |
| 142 | 247.95 | radiation | 30.0 | 1440 | < th | dose dependent | rect. | 16 | 10 |
| 148 | 247.96 | temperature | 20.0 | 720 | > th | dose dependent | rect. | 10 | 20 |
| 197 | 248.05 | temperature | 20.0 | 1440 | > th | dose dependent | rect. | 13 | 18 |
| 198 | 248.06 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 20 | 2 |
| 201 | 248.06 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 20 | 2 |
| 238 | 248.18 | temperature | 30.0 | 4320 | < th | dose dependent | rect. | 3 | 1 |
| 314 | 248.68 | temperature | 30.0 | 1440 | < th | dose dependent | rect. | 17 | 2 |
| 315 | 248.68 | temperature | 30.0 | 4320 | < th | dose dependent | rect. | 1 | 4 |
| 357 | 248.79 | temperature | 20.0 | 1440 | > th | dose independent | rect. | 3 | 2 |
| 405 | 248.98 | radiation | 1.0 | 1440 | < th | dose dependent | sin | 17 | NA |
| 420 | 249.04 | temperature | 20.0 | 1440 | > th | dose dependent | sin | 14 | NA |
| 428 | 249.05 | temperature | 10.0 | 4320 | > th | dose dependent | rect. | 21 | 9 |
| 437 | 249.08 | temperature | 30.0 | 4320 | < th | dose dependent | rect. | 21 | 9 |
| 522 | 249.32 | temperature | 20.0 | 1440 | < th | dose independent | rect. | 4 | 1 |
| 538 | 249.36 | radiation | 1.0 | 1440 | > th | dose independent | rect. | 16 | 3 |
| 613 | 249.49 | temperature | 20.0 | 720 | > th | dose dependent | rect. | 9 | 14 |
| 625 | 249.52 | temperature | 20.0 | 720 | > th | dose dependent | sin | 20 | NA |
| 647 | 249.55 | temperature | 20.0 | 720 | > th | dose dependent | no | NA | NA |
| 714 | 249.66 | radiation | 1.0 | 43200 | < th | dose dependent | rect. | 21 | 4 |
| 719 | 249.67 | radiation | 1.0 | 43200 | < th | dose dependent | rect. | 21 | 7 |
| 720 | 249.67 | temperature | 20.0 | 720 | > th | dose dependent | rect. | 10 | 11 |
| 784 | 249.76 | temperature | 20.0 | 720 | > th | dose dependent | rect. | 16 | 23 |