Os04g0653100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein of unknown function UPF0136, Transmembrane family protein.
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Os04g0653100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein of unknown function UPF0136, Transmembrane family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 75.53 | 0.408 | 10.2 | 1.72 | 1.71 | 1.44 | 0.763 | -12.1 | -0.342 | 16.8 | 29.83 | 4219 | -- | -- |
| 80.85 | 0.419 | 10.3 | 1.27 | 1.65 | 1.57 | 0.685 | -- | 0.0623 | 16.8 | 18.4 | 46370 | -- | -- |
| 77.04 | 0.409 | 10.2 | 1.71 | 1.72 | 1.44 | -- | -11.9 | -0.341 | 16.8 | 29.83 | 4223 | -- | -- |
| 79.66 | 0.416 | 10.3 | 1.06 | 1.68 | 1.41 | -- | -- | 0.00673 | 16.7 | 18.5 | 33436 | -- | -- |
| 215.69 | 0.688 | 10.4 | -0.484 | -- | -0.675 | -- | -1.15 | -0.488 | -- | 29.8 | 4027 | -- | -- |
| 88.89 | 0.442 | 10.4 | -0.431 | 1.68 | -- | 0.718 | -- | -0.487 | 16.7 | -- | -- | -- | -- |
| 90.24 | 0.445 | 10.4 | -0.427 | 1.68 | -- | -- | -- | -0.483 | 16.7 | -- | -- | -- | -- |
| 203.06 | 0.667 | 10.4 | -0.631 | -- | -0.806 | -- | -- | -0.576 | -- | 29.3 | 5551 | -- | -- |
| 83.03 | 0.424 | 10.4 | -- | 1.68 | 0.593 | -- | -- | -0.332 | 16.7 | 15.6 | 47520 | -- | -- |
| 240.6 | 0.725 | 10.4 | -0.491 | -- | -- | -- | -- | -0.527 | -- | -- | -- | -- | -- |
| 95.05 | 0.456 | 10.4 | -- | 1.69 | -- | -- | -- | -0.436 | 16.7 | -- | -- | -- | -- |
| 213.42 | 0.683 | 10.4 | -- | -- | -0.756 | -- | -- | -0.504 | -- | 29.3 | 5551 | -- | -- |
| 246.96 | 0.734 | 10.4 | -- | -- | -- | -- | -- | -0.473 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 69.13 | humidity | 60 | 43200 | < th | dose dependent | rect. | 12 | 3 |
| 2 | 69.24 | wind | 1 | 43200 | < th | dose dependent | rect. | 6 | 1 |
| 4 | 69.29 | humidity | 60 | 43200 | < th | dose dependent | rect. | 11 | 5 |
| 6 | 69.40 | humidity | 70 | 43200 | < th | dose dependent | rect. | 9 | 1 |
| 11 | 69.65 | humidity | 60 | 43200 | < th | dose dependent | rect. | 3 | 13 |
| 47 | 69.87 | humidity | 60 | 43200 | < th | dose dependent | sin | 1 | NA |
| 97 | 70.13 | humidity | 60 | 43200 | < th | dose dependent | rect. | 9 | 22 |
| 104 | 70.14 | humidity | 60 | 43200 | < th | dose dependent | rect. | 11 | 23 |
| 123 | 70.18 | humidity | 60 | 43200 | < th | dose dependent | no | NA | NA |
| 129 | 70.18 | humidity | 60 | 43200 | < th | dose dependent | rect. | 3 | 22 |
| 154 | 70.20 | humidity | 60 | 43200 | < th | dose dependent | rect. | 6 | 23 |
| 174 | 70.23 | humidity | 60 | 43200 | < th | dose dependent | rect. | 9 | 16 |
| 202 | 70.26 | humidity | 50 | 43200 | > th | dose independent | rect. | 15 | 1 |
| 222 | 70.32 | humidity | 50 | 43200 | > th | dose independent | rect. | 14 | 3 |
| 246 | 70.58 | humidity | 60 | 43200 | > th | dose independent | rect. | 9 | 1 |
| 261 | 70.76 | humidity | 70 | 43200 | < th | dose dependent | rect. | 2 | 8 |
| 273 | 70.89 | humidity | 60 | 43200 | > th | dose independent | rect. | 24 | 12 |
| 295 | 71.08 | humidity | 60 | 43200 | < th | dose independent | sin | 8 | NA |
| 298 | 71.10 | humidity | 50 | 43200 | > th | dose independent | rect. | 14 | 17 |
| 300 | 71.12 | wind | 1 | 43200 | < th | dose independent | rect. | 6 | 1 |
| 301 | 71.12 | humidity | 60 | 43200 | < th | dose independent | rect. | 23 | 13 |
| 313 | 71.19 | humidity | 60 | 43200 | > th | dose independent | rect. | 8 | 4 |
| 317 | 71.21 | humidity | 50 | 43200 | > th | dose independent | rect. | 14 | 6 |
| 329 | 71.26 | radiation | 20 | 43200 | < th | dose independent | rect. | 9 | 1 |
| 335 | 71.27 | radiation | 40 | 43200 | > th | dose independent | rect. | 11 | 21 |
| 340 | 71.28 | radiation | 40 | 43200 | > th | dose independent | rect. | 11 | 4 |
| 363 | 71.29 | humidity | 50 | 43200 | > th | dose independent | rect. | 14 | 10 |
| 364 | 71.29 | humidity | 50 | 43200 | > th | dose independent | rect. | 14 | 12 |
| 366 | 71.30 | radiation | 40 | 43200 | > th | dose independent | sin | 16 | NA |
| 371 | 71.31 | radiation | 30 | 43200 | > th | dose independent | rect. | 11 | 2 |
| 446 | 71.42 | radiation | 10 | 43200 | < th | dose dependent | rect. | 6 | 2 |
| 454 | 71.47 | radiation | 20 | 43200 | > th | dose independent | rect. | 14 | 20 |
| 456 | 71.48 | humidity | 60 | 43200 | < th | dose independent | rect. | 8 | 4 |
| 497 | 71.55 | humidity | 50 | 43200 | > th | dose independent | sin | 15 | NA |
| 525 | 71.60 | wind | 1 | 43200 | > th | dose independent | rect. | 4 | 4 |
| 530 | 71.61 | radiation | 30 | 43200 | > th | dose independent | rect. | 14 | 23 |
| 531 | 71.62 | radiation | 30 | 43200 | > th | dose independent | no | NA | NA |
| 532 | 71.62 | humidity | 60 | 43200 | < th | dose independent | rect. | 11 | 1 |
| 681 | 71.66 | radiation | 30 | 43200 | < th | dose independent | rect. | 11 | 1 |
| 685 | 71.68 | radiation | 20 | 43200 | > th | dose independent | sin | 12 | NA |
| 715 | 71.76 | humidity | 60 | 43200 | < th | dose independent | rect. | 9 | 1 |
| 926 | 71.83 | radiation | 20 | 43200 | > th | dose dependent | rect. | 12 | 3 |
| 966 | 71.86 | radiation | 40 | 43200 | < th | dose dependent | rect. | 9 | 10 |
| 990 | 71.89 | radiation | 20 | 43200 | < th | dose dependent | rect. | 15 | 20 |