Os04g0652500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os04g0652500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 56.09 | 0.352 | 8.3 | 1.05 | 0.551 | -2.01 | -0.559 | 1.45 | 0.352 | 5.42 | 16.89 | 292 | -- | -- |
| 57.36 | 0.353 | 8.34 | 0.811 | 0.536 | -2.01 | -0.906 | -- | 0.281 | 5.02 | 16.5 | 316 | -- | -- |
| 56.39 | 0.35 | 8.29 | 1.17 | 0.549 | -1.91 | -- | 2.08 | 0.389 | 5.19 | 18 | 321 | -- | -- |
| 59.6 | 0.36 | 8.34 | 0.798 | 0.559 | -2 | -- | -- | 0.279 | 5.05 | 16.1 | 332 | -- | -- |
| 67.29 | 0.382 | 8.28 | 1.39 | -- | -2.23 | -- | 2.77 | 0.492 | -- | 19.63 | 297 | -- | -- |
| 108.71 | 0.489 | 8.4 | 0.339 | 1.19 | -- | -0.494 | -- | -0.031 | 5.14 | -- | -- | -- | -- |
| 109.32 | 0.49 | 8.39 | 0.339 | 1.19 | -- | -- | -- | -0.0286 | 5.15 | -- | -- | -- | -- |
| 71.01 | 0.392 | 8.33 | 0.906 | -- | -2.31 | -- | -- | 0.367 | -- | 17.82 | 294 | -- | -- |
| 74.38 | 0.402 | 8.36 | -- | 0.65 | -1.54 | -- | -- | 0.17 | 5.66 | 18.36 | 263 | -- | -- |
| 182.91 | 0.632 | 8.41 | 0.381 | -- | -- | -- | -- | 0.00134 | -- | -- | -- | -- | -- |
| 112.35 | 0.496 | 8.4 | -- | 1.19 | -- | -- | -- | -0.0664 | 5.14 | -- | -- | -- | -- |
| 90.72 | 0.444 | 8.36 | -- | -- | -1.96 | -- | -- | 0.231 | -- | 19.24 | 284 | -- | -- |
| 186.74 | 0.638 | 8.42 | -- | -- | -- | -- | -- | -0.0409 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 51.59 | temperature | 30 | 270 | < th | dose dependent | rect. | 23 | 22 |
| 4 | 53.67 | temperature | 20 | 720 | > th | dose dependent | rect. | 19 | 16 |
| 6 | 53.85 | temperature | 20 | 720 | > th | dose dependent | sin | 8 | NA |
| 9 | 54.00 | temperature | 20 | 720 | > th | dose dependent | rect. | 19 | 18 |
| 17 | 54.39 | temperature | 20 | 270 | > th | dose dependent | rect. | 16 | 23 |
| 50 | 55.54 | temperature | 30 | 720 | < th | dose dependent | rect. | 17 | 19 |
| 65 | 55.78 | temperature | 15 | 270 | > th | dose dependent | rect. | 3 | 23 |
| 74 | 55.98 | temperature | 20 | 1440 | > th | dose dependent | rect. | 18 | 1 |
| 79 | 56.05 | temperature | 10 | 720 | > th | dose dependent | rect. | 21 | 16 |
| 89 | 56.17 | temperature | 10 | 720 | > th | dose dependent | rect. | 12 | 23 |
| 114 | 56.43 | temperature | 20 | 720 | > th | dose dependent | rect. | 15 | 20 |
| 121 | 56.58 | temperature | 20 | 1440 | > th | dose dependent | rect. | 15 | 14 |
| 141 | 56.72 | temperature | 10 | 720 | > th | dose dependent | sin | 9 | NA |
| 146 | 56.75 | temperature | 20 | 1440 | > th | dose dependent | sin | 15 | NA |
| 186 | 56.94 | temperature | 15 | 270 | > th | dose dependent | no | NA | NA |
| 278 | 57.27 | temperature | 20 | 1440 | > th | dose dependent | rect. | 23 | 23 |
| 286 | 57.30 | temperature | 20 | 1440 | > th | dose dependent | no | NA | NA |
| 330 | 57.41 | temperature | 20 | 1440 | > th | dose dependent | rect. | 3 | 23 |
| 359 | 57.51 | temperature | 10 | 720 | > th | dose dependent | rect. | 10 | 23 |
| 548 | 58.21 | temperature | 20 | 10 | > th | dose dependent | rect. | 23 | 23 |
| 579 | 58.36 | temperature | 30 | 1440 | < th | dose dependent | rect. | 17 | 2 |
| 611 | 58.46 | temperature | 20 | 10 | > th | dose dependent | rect. | 21 | 23 |
| 619 | 58.49 | temperature | 30 | 720 | < th | dose dependent | sin | 9 | NA |
| 632 | 58.54 | temperature | 30 | 270 | < th | dose dependent | no | NA | NA |
| 897 | 59.76 | temperature | 20 | 10 | > th | dose dependent | no | NA | NA |
| 925 | 59.89 | temperature | 20 | 1440 | > th | dose dependent | rect. | 1 | 8 |
| 938 | 59.93 | temperature | 30 | 720 | < th | dose dependent | rect. | 7 | 23 |