Os04g0651700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Non-protein coding transcript, unclassifiable transcript.
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Os04g0651700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Non-protein coding transcript, unclassifiable transcript.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 112.74 | 0.499 | 7.11 | -1.25 | 1.19 | 0.916 | -0.175 | 2.82 | -0.757 | 15.2 | 24.3 | 23 | -- | -- |
| 113.49 | 0.5 | 7.13 | -1.6 | 1.21 | 1.23 | 0.341 | -- | -0.776 | 15.3 | 26.29 | 13 | -- | -- |
| 112.81 | 0.495 | 7.11 | -1.29 | 1.19 | 0.929 | -- | 2.57 | -0.765 | 15.2 | 24.49 | 22 | -- | -- |
| 113.5 | 0.496 | 7.13 | -1.59 | 1.19 | 1.27 | -- | -- | -0.776 | 15.2 | 26.3 | 17 | -- | -- |
| 162.96 | 0.595 | 7.15 | -1.46 | -- | 2.01 | -- | 2.66 | -0.9 | -- | 24.4 | 19 | -- | -- |
| 135.14 | 0.545 | 7.13 | -1.44 | 1.61 | -- | 0.719 | -- | -0.738 | 15.2 | -- | -- | -- | -- |
| 136.81 | 0.548 | 7.12 | -1.42 | 1.61 | -- | -- | -- | -0.734 | 15.2 | -- | -- | -- | -- |
| 162.25 | 0.593 | 7.17 | -1.81 | -- | 2.25 | -- | -- | -0.983 | -- | 24.57 | 22 | -- | -- |
| 178.33 | 0.625 | 7.08 | -- | 1.42 | 0.991 | -- | -- | -0.559 | 15.2 | 28.06 | 14 | -- | -- |
| 284.46 | 0.788 | 7.13 | -1.49 | -- | -- | -- | -- | -0.776 | -- | -- | -- | -- | -- |
| 190.08 | 0.645 | 7.09 | -- | 1.64 | -- | -- | -- | -0.576 | 15.2 | -- | -- | -- | -- |
| 246.76 | 0.732 | 7.12 | -- | -- | 1.99 | -- | -- | -0.754 | -- | 24.71 | 22 | -- | -- |
| 343.05 | 0.865 | 7.09 | -- | -- | -- | -- | -- | -0.611 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 106.42 | temperature | 30 | 270 | < th | dose dependent | rect. | 1 | 18 |
| 7 | 108.08 | temperature | 25 | 270 | > th | dose dependent | sin | 5 | NA |
| 9 | 108.43 | temperature | 25 | 90 | > th | dose dependent | sin | 2 | NA |
| 10 | 108.53 | temperature | 30 | 270 | < th | dose independent | rect. | 1 | 18 |
| 13 | 108.64 | temperature | 25 | 30 | > th | dose dependent | rect. | 8 | 10 |
| 16 | 108.78 | temperature | 25 | 30 | > th | dose dependent | rect. | 21 | 21 |
| 26 | 109.30 | temperature | 25 | 30 | > th | dose dependent | rect. | 3 | 15 |
| 29 | 109.32 | temperature | 20 | 30 | > th | dose dependent | rect. | 6 | 12 |
| 37 | 109.46 | temperature | 25 | 30 | > th | dose dependent | rect. | 23 | 19 |
| 38 | 109.46 | temperature | 25 | 30 | > th | dose dependent | rect. | 19 | 23 |
| 39 | 109.52 | temperature | 25 | 270 | > th | dose dependent | rect. | 19 | 20 |
| 40 | 109.55 | temperature | 30 | 90 | < th | dose dependent | sin | 0 | NA |
| 67 | 109.93 | temperature | 25 | 270 | > th | dose dependent | rect. | 1 | 14 |
| 68 | 109.96 | temperature | 25 | 270 | > th | dose dependent | rect. | 21 | 18 |
| 69 | 109.98 | temperature | 10 | 30 | > th | dose dependent | sin | 0 | NA |
| 73 | 110.01 | temperature | 25 | 270 | > th | dose dependent | rect. | 6 | 9 |
| 74 | 110.01 | temperature | 25 | 270 | > th | dose dependent | rect. | 4 | 11 |
| 106 | 110.32 | temperature | 30 | 270 | < th | dose independent | rect. | 1 | 14 |
| 156 | 110.87 | temperature | 10 | 270 | > th | dose dependent | rect. | 5 | 11 |
| 218 | 111.75 | temperature | 25 | 10 | > th | dose dependent | rect. | 8 | 16 |
| 226 | 111.80 | temperature | 25 | 10 | > th | dose dependent | rect. | 8 | 23 |
| 228 | 111.81 | temperature | 25 | 10 | > th | dose dependent | rect. | 8 | 21 |
| 238 | 111.88 | temperature | 30 | 10 | < th | dose dependent | rect. | 4 | 17 |
| 246 | 111.94 | temperature | 30 | 270 | < th | dose independent | sin | 5 | NA |
| 267 | 112.06 | temperature | 25 | 10 | > th | dose dependent | rect. | 8 | 14 |
| 334 | 112.62 | temperature | 30 | 270 | > th | dose independent | sin | 5 | NA |
| 346 | 112.71 | temperature | 25 | 30 | > th | dose dependent | rect. | 3 | 21 |
| 356 | 112.77 | temperature | 25 | 10 | > th | dose dependent | rect. | 6 | 18 |
| 376 | 112.81 | temperature | 25 | 10 | > th | dose dependent | rect. | 6 | 23 |
| 421 | 112.95 | temperature | 25 | 30 | > th | dose dependent | rect. | 23 | 23 |
| 426 | 112.97 | temperature | 25 | 30 | > th | dose dependent | no | NA | NA |
| 493 | 113.08 | temperature | 30 | 90 | < th | dose independent | sin | 2 | NA |
| 593 | 113.38 | temperature | 25 | 30 | > th | dose dependent | rect. | 15 | 23 |
| 632 | 113.56 | temperature | 30 | 270 | > th | dose independent | rect. | 8 | 7 |
| 657 | 113.61 | temperature | 30 | 90 | < th | dose dependent | rect. | 7 | 14 |
| 718 | 113.80 | temperature | 25 | 10 | > th | dose dependent | rect. | 13 | 23 |
| 859 | 114.19 | temperature | 30 | 720 | > th | dose independent | rect. | 8 | 3 |
| 913 | 114.30 | temperature | 20 | 720 | > th | dose dependent | rect. | 6 | 1 |