FiT-DB / Search/ Help/ Sample detail

Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os04g0651500

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Growth factor, receptor domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.15 (0.0145) R2 : 0.00108
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.0215 (0.0306) R2dN8 : 0.0014 R2N8 : 0.00108
σ : 0.274
deviance : 34.41
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
31.56 0.264 3.16 0.107 0.128 0.195 -0.0502 0.955 -0.0451 7 90.12 5900 -- --
32.73 0.266 3.15 0.048 0.121 0.248 -0.107 -- -0.0668 6.41 120.6 4338 -- --
31.57 0.262 3.16 0.108 0.129 0.196 -- 0.957 -0.045 7.09 90.63 5913 -- --
32.73 0.266 3.16 0.0414 0.137 0.256 -- -- -0.0755 6.62 135.6 4494 -- --
32.43 0.265 3.16 0.108 -- 0.197 -- 0.95 -0.0437 -- 90.07 5849 -- --
33.52 0.271 3.14 0.0307 0.127 -- -0.0668 -- -0.0205 6.89 -- -- -- --
33.53 0.271 3.14 0.0297 0.127 -- -- -- -0.0202 7.03 -- -- -- --
33.59 0.27 3.16 0.0435 -- 0.253 -- -- -0.0709 -- 136.6 4274 -- --
32.78 0.267 3.16 -- 0.134 0.251 -- -- -0.079 6.71 143.5 4458 -- --
34.38 0.274 3.15 0.0323 -- -- -- -- -0.0179 -- -- -- -- --
33.55 0.271 3.15 -- 0.127 -- -- -- -0.0236 7.02 -- -- -- --
33.64 0.27 3.16 -- -- 0.248 -- -- -0.0742 -- 122.3 4271 -- --
34.41 0.274 3.15 -- -- -- -- -- -0.0215 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 29.84 humidity 80.0 10 < th dose independent rect. 7 1
2 29.84 radiation 10.0 30 > th dose independent rect. 7 1
6 30.06 humidity 80.0 10 < th dose independent rect. 23 9
28 30.45 radiation 10.0 10 > th dose independent rect. 16 16
36 30.63 atmosphere 1000.0 10 > th dose independent rect. 21 23
38 30.71 radiation 1.0 1440 < th dose dependent rect. 21 1
39 30.74 humidity 90.0 30 < th dose dependent rect. 20 1
54 30.79 humidity 90.0 10 < th dose independent rect. 20 1
55 30.81 atmosphere 1005.0 10 > th dose independent rect. 20 1
61 30.83 temperature 20.0 30 > th dose independent rect. 20 1
62 30.83 wind 5.0 30 < th dose dependent rect. 20 1
63 30.84 wind 5.0 30 < th dose independent rect. 20 1
68 30.84 atmosphere 995.0 30 > th dose dependent rect. 20 1
69 30.85 wind 1.0 30 > th dose independent rect. 20 1
72 30.85 temperature 10.0 30 > th dose independent rect. 20 1
74 30.85 temperature 30.0 30 < th dose independent rect. 20 1
75 30.85 humidity 50.0 30 > th dose independent rect. 20 1
79 30.85 atmosphere 1010.0 30 < th dose independent rect. 20 1
81 30.85 radiation 1.0 30 < th dose independent rect. 20 1
86 30.85 precipitation 0.1 30 < th dose independent rect. 20 1
87 30.85 temperature 10.0 30 > th dose independent rect. 21 23
88 30.85 temperature 30.0 30 < th dose dependent rect. 20 1
90 30.85 radiation 1.0 30 < th dose dependent rect. 20 1
96 30.85 precipitation 0.1 30 < th dose dependent rect. 20 1
98 30.86 temperature 10.0 30 > th dose dependent rect. 20 1
103 30.87 atmosphere 1015.0 30 < th dose dependent rect. 20 1
105 30.88 temperature 10.0 1440 > th dose independent rect. 21 1
108 30.88 temperature 30.0 1440 < th dose independent rect. 21 1
112 30.88 humidity 50.0 1440 > th dose independent rect. 21 1
118 30.88 atmosphere 995.0 1440 > th dose independent rect. 21 1
119 30.88 radiation 1.0 1440 < th dose independent rect. 21 1
139 30.88 temperature 10.0 1440 > th dose independent rect. 22 23
142 30.88 humidity 50.0 30 > th dose dependent rect. 20 1
146 30.89 wind 1.0 30 > th dose dependent rect. 20 1
210 31.12 temperature 25.0 30 > th dose independent rect. 7 1
220 31.22 precipitation 0.1 30 < th dose independent rect. 21 23
221 31.22 humidity 80.0 14400 < th dose dependent rect. 4 5
222 31.22 precipitation 0.1 30 < th dose dependent rect. 21 23
232 31.31 humidity 90.0 90 < th dose dependent rect. 2 6
238 31.39 humidity 90.0 10 < th dose dependent rect. 7 1
242 31.42 atmosphere 1000.0 30 > th dose independent rect. 8 23
249 31.45 humidity 70.0 14400 > th dose independent rect. 7 3
260 31.46 humidity 70.0 14400 > th dose independent rect. 8 1
263 31.47 humidity 70.0 14400 < th dose independent rect. 8 2
290 31.51 wind 9.0 30 < th dose independent rect. 21 23
296 31.53 humidity 50.0 30 > th dose independent rect. 21 23
317 31.58 humidity 60.0 14400 < th dose independent rect. 11 1
320 31.59 atmosphere 1005.0 30 > th dose independent rect. 7 1
342 31.68 atmosphere 1000.0 90 > th dose independent rect. 8 11
344 31.68 humidity 60.0 14400 < th dose dependent rect. 12 1
348 31.69 humidity 70.0 4320 > th dose independent rect. 10 1
350 31.69 wind 7.0 10 < th dose dependent rect. 7 1
352 31.70 precipitation 0.1 1440 < th dose independent rect. 21 1
356 31.70 precipitation 0.1 1440 < th dose dependent rect. 21 1
368 31.71 temperature 15.0 10 > th dose dependent rect. 7 1
369 31.71 humidity 50.0 4320 > th dose dependent rect. 11 2
373 31.72 wind 5.0 30 < th dose independent rect. 7 1
381 31.72 humidity 50.0 14400 > th dose dependent rect. 8 1
383 31.73 wind 1.0 30 > th dose independent rect. 7 1
402 31.74 humidity 70.0 4320 > th dose independent rect. 8 7
412 31.75 radiation 1.0 10 > th dose dependent rect. 7 1
414 31.75 humidity 70.0 4320 > th dose dependent rect. 5 8
435 31.76 humidity 60.0 14400 < th dose dependent rect. 12 4
440 31.76 humidity 50.0 4320 > th dose dependent rect. 3 12
455 31.77 humidity 80.0 4320 < th dose dependent rect. 11 2
499 31.78 humidity 60.0 14400 < th dose independent rect. 19 18
525 31.78 humidity 90.0 4320 < th dose dependent rect. 23 17
527 31.79 humidity 70.0 4320 > th dose independent sin 2 NA
555 31.79 humidity 50.0 4320 > th dose dependent sin 4 NA
569 31.79 humidity 90.0 4320 < th dose dependent rect. 5 11
695 31.81 humidity 80.0 14400 < th dose dependent sin 8 NA
747 31.82 humidity 70.0 4320 < th dose independent sin 2 NA
815 31.83 humidity 90.0 90 < th dose independent rect. 2 3
865 31.83 humidity 90.0 4320 < th dose dependent sin 3 NA
868 31.83 atmosphere 995.0 10 > th dose dependent rect. 7 1