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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os04g0651000

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Peroxidase.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 2.91 (0.0239) R2 : 0.0261
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.176 (0.0503) R2dN8 : 0.0337 R2N8 : 0.0261
σ : 0.45
deviance : 92.91
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = wind, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
89.31 0.444 2.92 -0.0233 0.136 -0.241 -0.225 1.01 0.166 5.59 1 16 -- --
90.07 0.442 2.91 0.0146 0.143 -0.165 -0.314 -- 0.179 5.34 1.149 17 -- --
89.43 0.44 2.92 -0.0263 0.135 -0.243 -- 1.07 0.166 5.7 1.016 16 -- --
90.32 0.443 2.91 0.0152 0.142 -0.162 -- -- 0.179 5.73 1.122 16 -- --
90.2 0.442 2.92 -0.0175 -- -0.283 -- 1.04 0.162 -- 1.2 16 -- --
90.75 0.447 2.91 0.0368 0.192 -- -0.303 -- 0.174 5.25 -- -- -- --
90.98 0.447 2.91 0.0367 0.19 -- -- -- 0.176 5.38 -- -- -- --
90.72 0.444 2.91 -0.0332 -- -0.176 -- -- 0.181 -- 2.236 19 -- --
90.33 0.443 2.91 -- 0.141 -0.164 -- -- 0.177 5.73 1.146 16 -- --
92.86 0.45 2.91 0.0432 -- -- -- -- 0.181 -- -- -- -- --
91.01 0.446 2.91 -- 0.191 -- -- -- 0.172 5.37 -- -- -- --
90.66 0.443 2.91 -- -- -0.181 -- -- 0.182 -- 2 30 -- --
92.91 0.45 2.91 -- -- -- -- -- 0.176 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 79.79 atmosphere 1005.0 30 > th dose dependent rect. 2 1
3 79.96 atmosphere 1005.0 30 > th dose independent rect. 2 1
4 79.97 temperature 20.0 30 > th dose dependent rect. 2 1
5 79.99 wind 3.0 30 < th dose dependent rect. 2 1
7 80.02 wind 3.0 30 < th dose independent rect. 2 1
9 80.03 temperature 25.0 30 < th dose independent rect. 2 1
14 80.12 temperature 20.0 30 > th dose independent rect. 2 1
19 80.19 temperature 10.0 30 > th dose independent rect. 2 1
22 80.19 humidity 50.0 30 > th dose independent rect. 2 1
26 80.19 atmosphere 1010.0 30 < th dose independent rect. 2 1
28 80.19 radiation 1.0 30 < th dose independent rect. 2 1
33 80.19 precipitation 0.1 30 < th dose independent rect. 2 1
34 80.19 temperature 10.0 30 > th dose independent rect. 3 23
35 80.19 radiation 1.0 30 < th dose dependent rect. 2 1
40 80.19 precipitation 0.1 30 < th dose dependent rect. 2 1
42 80.25 humidity 50.0 30 > th dose dependent rect. 2 1
48 80.71 atmosphere 1015.0 30 < th dose dependent rect. 2 1
49 80.84 temperature 30.0 30 < th dose dependent rect. 2 1
56 81.61 wind 1.0 30 > th dose independent rect. 2 1
66 82.19 wind 9.0 30 < th dose independent rect. 3 23
100 83.04 radiation 10.0 10 > th dose independent rect. 6 1
126 83.04 radiation 10.0 10 > th dose dependent rect. 6 1
153 83.73 radiation 1.0 4320 < th dose dependent rect. 3 1
154 83.86 radiation 10.0 43200 < th dose dependent rect. 3 1
162 83.93 wind 9.0 1440 < th dose independent rect. 3 1
163 83.93 temperature 10.0 1440 > th dose independent rect. 3 1
166 83.93 temperature 30.0 1440 < th dose independent rect. 3 1
170 83.93 humidity 50.0 1440 > th dose independent rect. 3 1
179 83.93 atmosphere 995.0 1440 > th dose independent rect. 3 1
180 83.93 radiation 1.0 1440 < th dose independent rect. 3 1
200 83.93 temperature 10.0 1440 > th dose independent rect. 4 23
223 85.30 atmosphere 995.0 30 > th dose independent rect. 3 23
228 85.65 precipitation 0.1 30 < th dose independent rect. 3 23
229 85.65 precipitation 0.1 30 < th dose dependent rect. 3 23
230 85.71 atmosphere 1005.0 30 > th dose dependent rect. 6 1
231 85.77 wind 3.0 30 < th dose dependent rect. 6 1
237 85.92 temperature 25.0 90 > th dose dependent rect. 1 3
245 86.23 temperature 20.0 30 > th dose dependent rect. 2 5
284 86.69 atmosphere 1005.0 90 > th dose dependent rect. 1 6
285 86.71 humidity 80.0 30 > th dose dependent rect. 6 1
296 86.82 temperature 30.0 30 < th dose dependent rect. 6 1
308 86.99 wind 3.0 30 < th dose independent rect. 6 1
320 87.15 temperature 25.0 10 > th dose independent rect. 6 1
328 87.22 wind 9.0 1440 < th dose independent rect. 7 1
329 87.22 temperature 10.0 1440 > th dose independent rect. 7 1
333 87.22 temperature 30.0 1440 < th dose independent rect. 7 1
337 87.22 humidity 50.0 1440 > th dose independent rect. 7 1
342 87.22 atmosphere 995.0 1440 > th dose independent rect. 7 1
343 87.22 atmosphere 1015.0 1440 < th dose independent rect. 7 1
344 87.22 temperature 10.0 1440 > th dose independent rect. 8 23
352 87.27 humidity 90.0 30 < th dose independent rect. 6 1
363 87.35 wind 1.0 30 > th dose independent rect. 6 1
371 87.41 humidity 80.0 30 > th dose independent rect. 6 1
374 87.44 atmosphere 1005.0 30 > th dose independent rect. 6 1
378 87.45 temperature 10.0 30 > th dose independent rect. 6 1
380 87.45 temperature 30.0 30 < th dose independent rect. 6 1
381 87.45 humidity 50.0 30 > th dose independent rect. 6 1
384 87.45 atmosphere 995.0 30 > th dose independent rect. 6 1
385 87.45 atmosphere 1015.0 30 < th dose independent rect. 6 1
386 87.45 radiation 20.0 30 < th dose independent rect. 6 1
389 87.45 precipitation 0.1 30 < th dose independent rect. 6 1
390 87.45 temperature 10.0 30 > th dose independent rect. 7 23
391 87.45 precipitation 0.1 30 < th dose dependent rect. 6 1
394 87.46 radiation 10.0 10 < th dose independent rect. 2 5
398 87.47 wind 5.0 30 < th dose dependent rect. 2 5
406 87.52 wind 9.0 30 < th dose independent rect. 7 23
427 87.66 temperature 10.0 30 > th dose dependent rect. 6 1
437 87.74 wind 3.0 10 < th dose independent rect. 2 6
438 87.74 humidity 50.0 30 > th dose independent rect. 3 23
452 87.78 atmosphere 1000.0 10 > th dose dependent rect. 2 3
455 87.80 radiation 40.0 30 < th dose dependent rect. 6 1
466 87.83 radiation 20.0 10 < th dose dependent rect. 2 6
476 87.88 humidity 80.0 10 > th dose independent rect. 2 5
499 87.95 wind 9.0 30 < th dose independent rect. 7 19
508 87.97 wind 9.0 1440 < th dose independent rect. 3 5
509 87.97 temperature 10.0 1440 > th dose independent rect. 3 5
512 87.97 temperature 30.0 1440 < th dose independent rect. 3 5
516 87.97 humidity 50.0 1440 > th dose independent rect. 3 5
521 87.97 atmosphere 995.0 1440 > th dose independent rect. 3 5
522 87.97 precipitation 0.1 30 < th dose independent rect. 2 5
523 87.97 temperature 10.0 1440 > th dose independent rect. 8 19
527 87.97 precipitation 0.1 30 < th dose dependent rect. 2 5
530 87.98 atmosphere 1000.0 30 > th dose independent rect. 2 5
535 87.99 atmosphere 995.0 30 > th dose independent rect. 7 19
536 87.99 wind 5.0 30 < th dose dependent rect. 2 3
544 88.00 temperature 10.0 30 > th dose independent rect. 2 5
546 88.00 temperature 30.0 30 < th dose independent rect. 2 5
547 88.00 humidity 50.0 30 > th dose independent rect. 2 5
551 88.00 atmosphere 1015.0 30 < th dose independent rect. 2 5
555 88.00 temperature 10.0 30 > th dose independent rect. 7 19
556 88.00 precipitation 0.1 30 < th dose independent rect. 7 19
560 88.00 precipitation 0.1 30 < th dose dependent rect. 7 19
563 88.02 wind 5.0 10 < th dose independent rect. 2 3
564 88.02 temperature 10.0 720 > th dose independent rect. 7 8
565 88.02 atmosphere 1015.0 720 < th dose independent rect. 7 8
567 88.02 temperature 10.0 720 > th dose independent rect. 15 16
580 88.05 wind 1.0 90 > th dose independent rect. 7 18
602 88.07 humidity 50.0 30 > th dose independent rect. 7 19
665 88.16 temperature 25.0 10 > th dose independent rect. 3 4
677 88.16 wind 9.0 720 < th dose independent rect. 19 8
680 88.16 wind 9.0 10 < th dose independent rect. 5 21
684 88.17 wind 1.0 90 > th dose independent rect. 1 6
705 88.21 precipitation 0.1 720 < th dose independent rect. 15 16
708 88.21 humidity 50.0 30 > th dose dependent rect. 2 5
714 88.21 precipitation 0.1 720 < th dose dependent rect. 15 16
722 88.24 precipitation 0.1 10 < th dose independent rect. 2 3
726 88.24 precipitation 0.1 10 < th dose dependent rect. 2 3
732 88.25 radiation 1.0 720 < th dose dependent rect. 19 8
735 88.26 temperature 10.0 720 > th dose independent rect. 19 8
736 88.26 temperature 30.0 720 < th dose independent rect. 19 8
737 88.26 humidity 50.0 720 > th dose independent rect. 19 8
738 88.26 atmosphere 995.0 720 > th dose independent rect. 19 8
739 88.26 radiation 1.0 720 < th dose independent rect. 19 8
745 88.26 temperature 10.0 720 > th dose independent rect. 3 16
755 88.27 humidity 50.0 10 > th dose dependent rect. 2 3
762 88.28 temperature 10.0 10 > th dose independent rect. 2 3
764 88.28 temperature 30.0 10 < th dose independent rect. 2 3
765 88.28 humidity 50.0 10 > th dose independent rect. 2 3
768 88.28 atmosphere 995.0 10 > th dose independent rect. 2 3
770 88.28 atmosphere 1010.0 10 < th dose independent rect. 2 3
772 88.28 radiation 1.0 10 < th dose independent rect. 2 3
780 88.28 temperature 10.0 10 > th dose independent rect. 5 21
781 88.28 atmosphere 995.0 10 > th dose independent rect. 5 21
784 88.28 radiation 20.0 10 < th dose dependent rect. 2 3
814 88.29 precipitation 0.1 30 < th dose independent rect. 5 21
823 88.29 precipitation 0.1 30 < th dose dependent rect. 5 21
824 88.30 atmosphere 995.0 720 > th dose independent rect. 7 8
863 88.35 wind 9.0 1440 < th dose independent rect. 3 3
864 88.35 temperature 10.0 1440 > th dose independent rect. 3 3
867 88.35 temperature 30.0 1440 < th dose independent rect. 3 3
871 88.35 humidity 50.0 1440 > th dose independent rect. 3 3
880 88.35 atmosphere 995.0 1440 > th dose independent rect. 3 3
881 88.35 radiation 20.0 1440 < th dose independent rect. 3 3
892 88.35 temperature 10.0 1440 > th dose independent rect. 6 21
897 88.36 wind 1.0 10 > th dose independent rect. 7 23
924 88.40 humidity 50.0 30 > th dose independent rect. 5 21
961 88.43 radiation 10.0 10 < th dose dependent rect. 2 16
962 88.44 atmosphere 995.0 720 > th dose independent rect. 15 16
970 88.46 temperature 25.0 1440 < th dose independent rect. 1 1
971 88.46 wind 1.0 30 < th dose independent rect. 24 3
984 88.47 temperature 10.0 30 > th dose dependent rect. 7 19