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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os04g0650700

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to L-asparaginase (L-asparagine amidohydrolase).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 15.3 (0.0563) R2 : 0.817
β1 : 1.87 (0.259) R2dD : 0.0622 R2D : 0.261
β2 : 0.553 (0.101) R2dC : 0.0121 R2C : -0.0216
β3 : 2.19 (0.127) R2dE : 0.208 R2E : 0.432
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -6.08 (0.559) R2dD*E : 0.161 R2D*E : 0.44
γ1 : -0.481 (0.119) R2dN8 : 0.0156 R2N8 : -0.0595
σ : 0.779
deviance : 280.07
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_____
C
peak time of C : 22.1
E
wheather : temperature
threshold : 25
memory length : 4314
response mode : > th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 10
open length of G : 1.09

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
279.2 0.785 15.3 1.89 0.553 2.19 0.469 -6.09 -0.478 22.2 25 4315 10 1.09
390.78 0.921 15.2 2.99 0.62 3.09 0.404 -- -0.377 22.8 24.5 5749 10 1.28
280.07 0.779 15.3 1.87 0.553 2.19 -- -6.08 -0.481 22.1 25 4314 10 1.09
360.8 0.885 15.2 2.91 0.463 3.5 -- -- -0.356 21.1 24.51 5709 10.3 2.48
298.08 0.804 15.3 1.87 -- 2.25 -- -6.05 -0.506 -- 25 4292 10 1.1
582.89 1.13 14.7 5.86 0.622 -- 0.58 -- 1.18 22.5 -- -- -- --
584.24 1.13 14.7 5.84 0.621 -- -- -- 1.17 22.3 -- -- -- --
370.76 0.897 15.1 3 -- 3.53 -- -- -0.348 -- 24.5 5685 10.3 2.48
528.44 1.07 15.1 -- 0.683 4.15 -- -- -0.539 20.9 24.4 25822 9.9 2.73
607.74 1.15 14.6 5.85 -- -- -- -- 1.18 -- -- -- -- --
1482.18 1.8 14.8 -- 0.662 -- -- -- 0.524 23 -- -- -- --
344.8 0.865 15.1 -- -- 5.03 -- -- -0.64 -- 21.9 32617 10.4 3.23
1509.45 1.81 14.8 -- -- -- -- -- 0.527 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 265.12 radiation 1 43200 < th dose independent rect. 20 9
3 265.47 radiation 1 14400 > th dose independent rect. 8 5
4 265.55 radiation 1 14400 < th dose independent rect. 8 5
7 265.80 radiation 1 43200 < th dose independent rect. 22 7
9 265.98 radiation 1 43200 > th dose independent rect. 4 1
19 265.98 radiation 1 43200 > th dose dependent rect. 4 1
30 266.19 radiation 1 43200 < th dose independent rect. 4 1
47 271.46 humidity 80 43200 < th dose independent rect. 13 1
48 271.46 radiation 10 43200 < th dose independent rect. 18 7
53 271.93 radiation 10 43200 < th dose independent rect. 18 3
56 272.08 humidity 80 43200 > th dose independent rect. 13 1
57 272.15 radiation 10 43200 < th dose independent rect. 18 1
70 272.68 radiation 10 43200 < th dose dependent rect. 19 10
73 272.93 radiation 20 43200 < th dose independent rect. 18 14
89 273.60 radiation 10 43200 < th dose dependent rect. 22 7
92 273.93 radiation 10 43200 > th dose dependent rect. 6 1
111 274.73 radiation 10 43200 < th dose dependent rect. 3 2
115 275.03 radiation 10 43200 < th dose independent sin 9 NA
119 275.34 radiation 1 43200 < th dose dependent rect. 9 1
217 276.42 radiation 40 43200 < th dose independent rect. 15 10
220 276.55 radiation 10 43200 < th dose independent rect. 17 19
224 276.59 radiation 40 43200 < th dose independent rect. 15 15
225 276.60 radiation 40 43200 < th dose independent rect. 15 6
228 276.64 radiation 40 43200 < th dose independent rect. 15 1
251 277.24 radiation 1 14400 < th dose dependent rect. 8 5
273 277.70 radiation 1 14400 < th dose dependent rect. 9 3
328 278.18 radiation 1 43200 < th dose dependent rect. 18 2
332 278.20 radiation 1 43200 < th dose dependent rect. 18 7
361 279.27 temperature 15 43200 > th dose independent rect. 10 1
381 279.49 temperature 15 43200 < th dose independent rect. 10 1
389 279.91 humidity 90 43200 > th dose independent rect. 20 4
391 280.00 radiation 1 43200 > th dose independent rect. 8 1
417 280.53 radiation 1 14400 < th dose dependent rect. 7 7
418 280.55 radiation 40 43200 < th dose dependent rect. 20 12
419 280.56 radiation 40 43200 < th dose dependent rect. 6 1
420 280.56 radiation 40 43200 < th dose dependent rect. 5 3
430 280.59 radiation 30 43200 < th dose dependent rect. 1 7
477 281.01 radiation 40 43200 > th dose dependent rect. 7 4
513 281.14 wind 5 43200 > th dose dependent rect. 14 1
515 281.19 temperature 25 4320 > th dose independent rect. 10 1
679 282.56 radiation 40 43200 > th dose dependent sin 11 NA
686 282.86 humidity 90 43200 > th dose independent rect. 22 2
690 282.95 humidity 90 43200 > th dose dependent rect. 21 3
819 284.48 radiation 10 43200 < th dose independent rect. 11 22
824 284.58 humidity 90 43200 > th dose dependent rect. 19 6
918 285.29 radiation 10 43200 < th dose independent rect. 4 19
922 285.29 radiation 10 43200 < th dose independent rect. 1 22
924 285.30 radiation 10 43200 < th dose independent no NA NA
925 285.30 radiation 10 43200 < th dose independent rect. 4 15
930 285.30 radiation 10 43200 < th dose independent rect. 1 18
934 285.30 radiation 10 43200 < th dose independent rect. 1 20
945 285.30 radiation 10 43200 < th dose independent rect. 20 23
986 285.44 temperature 15 43200 > th dose independent rect. 10 4