Os04g0650300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Hypothetical protein.
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Os04g0650300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 245.58 | 0.736 | 9.59 | -1.62 | 0.253 | 2.51 | -0.711 | -1.3 | -0.55 | 21.5 | 25.03 | 1116 | -- | -- |
| 246.1 | 0.731 | 9.55 | -1.32 | 0.257 | 2.4 | -0.803 | -- | -0.483 | 21.5 | 24.94 | 1111 | -- | -- |
| 247.13 | 0.732 | 9.61 | -1.7 | 0.26 | 2.54 | -- | -1.74 | -0.588 | 22.2 | 24.93 | 1116 | -- | -- |
| 248.29 | 0.734 | 9.55 | -1.3 | 0.278 | 2.37 | -- | -- | -0.49 | 21.8 | 24.9 | 1124 | -- | -- |
| 249.1 | 0.735 | 9.6 | -1.69 | -- | 2.72 | -- | -1.69 | -0.615 | -- | 24.75 | 1046 | -- | -- |
| 422.23 | 0.963 | 9.5 | -0.601 | 0.77 | -- | -0.051 | -- | -0.233 | 23.5 | -- | -- | -- | -- |
| 422.24 | 0.962 | 9.5 | -0.599 | 0.77 | -- | -- | -- | -0.233 | 23.5 | -- | -- | -- | -- |
| 250.76 | 0.738 | 9.55 | -1.3 | -- | 2.56 | -- | -- | -0.503 | -- | 24.7 | 1047 | -- | -- |
| 288.53 | 0.791 | 9.51 | -- | 0.354 | 2.04 | -- | -- | -0.287 | 21.7 | 25.3 | 1136 | -- | -- |
| 459.5 | 1 | 9.49 | -0.578 | -- | -- | -- | -- | -0.225 | -- | -- | -- | -- | -- |
| 431.71 | 0.972 | 9.49 | -- | 0.764 | -- | -- | -- | -0.166 | 23.5 | -- | -- | -- | -- |
| 292.35 | 0.796 | 9.5 | -- | -- | 2.27 | -- | -- | -0.309 | -- | 24.99 | 1038 | -- | -- |
| 468.33 | 1.01 | 9.47 | -- | -- | -- | -- | -- | -0.16 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 255.11 | temperature | 25 | 1440 | > th | dose dependent | rect. | 7 | 8 |
| 19 | 256.07 | temperature | 25 | 1440 | > th | dose dependent | sin | 2 | NA |
| 28 | 256.31 | temperature | 20 | 720 | > th | dose dependent | rect. | 11 | 13 |
| 45 | 256.94 | temperature | 25 | 1440 | > th | dose dependent | rect. | 22 | 18 |
| 68 | 257.32 | temperature | 20 | 720 | > th | dose dependent | sin | 18 | NA |
| 190 | 259.03 | temperature | 25 | 720 | > th | dose dependent | sin | 15 | NA |
| 203 | 259.19 | temperature | 25 | 1440 | > th | dose dependent | no | NA | NA |
| 211 | 259.31 | temperature | 25 | 1440 | > th | dose dependent | rect. | 13 | 23 |
| 222 | 259.69 | temperature | 25 | 720 | > th | dose dependent | rect. | 15 | 18 |
| 235 | 260.08 | temperature | 25 | 1440 | > th | dose dependent | rect. | 11 | 23 |
| 259 | 260.89 | temperature | 25 | 720 | > th | dose dependent | rect. | 17 | 16 |
| 284 | 261.52 | temperature | 10 | 1440 | > th | dose dependent | rect. | 10 | 4 |
| 292 | 261.65 | temperature | 10 | 1440 | > th | dose dependent | rect. | 8 | 9 |
| 293 | 261.66 | temperature | 10 | 1440 | > th | dose dependent | rect. | 9 | 6 |
| 555 | 265.26 | temperature | 30 | 720 | < th | dose dependent | rect. | 9 | 14 |
| 642 | 266.43 | humidity | 50 | 14400 | < th | dose independent | rect. | 16 | 18 |
| 648 | 266.50 | temperature | 30 | 720 | < th | dose dependent | sin | 19 | NA |
| 662 | 266.57 | humidity | 60 | 14400 | < th | dose dependent | rect. | 17 | 1 |
| 688 | 266.80 | temperature | 10 | 1440 | > th | dose dependent | sin | 23 | NA |
| 689 | 266.81 | humidity | 70 | 14400 | < th | dose independent | rect. | 19 | 1 |
| 710 | 267.13 | temperature | 30 | 1440 | < th | dose independent | rect. | 11 | 1 |
| 752 | 267.77 | temperature | 30 | 1440 | < th | dose independent | rect. | 18 | 20 |
| 769 | 268.06 | temperature | 25 | 1440 | > th | dose dependent | rect. | 15 | 2 |
| 800 | 268.38 | temperature | 30 | 1440 | < th | dose independent | rect. | 9 | 5 |
| 860 | 269.01 | temperature | 30 | 1440 | > th | dose independent | rect. | 18 | 20 |
| 874 | 269.15 | temperature | 30 | 1440 | > th | dose independent | rect. | 11 | 1 |
| 890 | 269.32 | temperature | 30 | 1440 | > th | dose independent | rect. | 9 | 5 |
| 907 | 269.45 | radiation | 20 | 1440 | > th | dose independent | rect. | 16 | 15 |
| 910 | 269.47 | humidity | 70 | 14400 | < th | dose independent | rect. | 19 | 12 |
| 911 | 269.49 | radiation | 20 | 1440 | > th | dose independent | rect. | 16 | 1 |
| 932 | 269.61 | humidity | 50 | 14400 | > th | dose independent | rect. | 16 | 2 |
| 948 | 269.71 | temperature | 30 | 1440 | < th | dose independent | rect. | 9 | 23 |
| 949 | 269.72 | humidity | 50 | 14400 | > th | dose independent | rect. | 16 | 18 |
| 950 | 269.73 | temperature | 30 | 1440 | < th | dose independent | rect. | 9 | 13 |
| 954 | 269.74 | temperature | 30 | 1440 | < th | dose independent | rect. | 9 | 16 |
| 956 | 269.74 | temperature | 30 | 1440 | < th | dose independent | rect. | 9 | 18 |
| 957 | 269.75 | temperature | 30 | 1440 | < th | dose independent | rect. | 9 | 10 |
| 980 | 269.90 | humidity | 50 | 14400 | < th | dose independent | rect. | 16 | 2 |
| 999 | 269.92 | humidity | 50 | 14400 | > th | dose independent | rect. | 16 | 7 |