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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os04g0649700

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Protein kinase domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 4.93 (0.0676) R2 : 0.494
β1 : -2.83 (0.252) R2dD : 0.156 R2D : 0.0469
β2 : 0.915 (0.171) R2dC : 0.0345 R2C : 0.0469
β3 : 3.85 (0.206) R2dE : 0.396 R2E : 0.306
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.122 (0.144) R2dN8 : 0.000897 R2N8 : -0.00117
σ : 1.26
deviance : 734.7
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_____
C
peak time of C : 20.3
E
wheather : temperature
threshold : 26.19
memory length : 991
response mode : > th
dose dependency : dose dependent
G
type of G : sin
peak or start time of G : 7.83
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = sin)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
709.86 1.25 5.08 -4.2 0.887 4.58 -2.39 -6.9 -0.345 19.6 26.13 990 8.06 --
718.25 1.25 4.92 -2.96 0.883 3.85 -2.41 -- -0.102 19.8 26.16 976 8.08 --
724.72 1.25 5.09 -4.27 0.886 4.66 -- -7.68 -0.325 20.1 26.18 1000 8.09 --
734.7 1.26 4.93 -2.83 0.915 3.85 -- -- -0.122 20.3 26.19 991 7.83 --
754.78 1.28 5.14 -4.5 -- 4.91 -- -8.68 -0.545 -- 25.84 947 9.64 --
1216.42 1.64 4.96 -1.98 1.48 -- -0.128 -- -0.223 23.4 -- -- -- --
1216.48 1.63 4.96 -1.97 1.48 -- -- -- -0.222 23.4 -- -- -- --
769.8 1.29 4.93 -2.9 -- 4.04 -- -- -0.199 -- 25.93 939 9.4 --
936.49 1.43 4.82 -- 0.988 3.34 -- -- 0.368 21.4 27.05 971 6.57 --
1353.83 1.72 4.92 -1.93 -- -- -- -- -0.207 -- -- -- -- --
1318.9 1.7 4.91 -- 1.46 -- -- -- -0.00283 23.3 -- -- -- --
980.97 1.46 4.83 -- -- 3.64 -- -- 0.198 -- 26.16 858 7.33 --
1452.32 1.78 4.87 -- -- -- -- -- 0.00731 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 739.48 temperature 25 720 > th dose dependent rect. 17 16
5 762.10 temperature 25 720 > th dose dependent sin 12 NA
7 763.57 temperature 25 720 > th dose dependent rect. 17 6
34 780.89 temperature 30 1440 < th dose independent sin 12 NA
36 781.05 temperature 30 1440 > th dose independent sin 13 NA
41 781.53 temperature 30 1440 > th dose dependent rect. 14 5
73 782.32 humidity 70 1440 < th dose independent rect. 18 13
75 782.38 humidity 70 1440 < th dose independent rect. 18 2
114 784.40 temperature 30 1440 > th dose independent rect. 15 4
169 786.13 temperature 30 1440 < th dose independent rect. 15 12
170 786.13 temperature 30 1440 < th dose independent rect. 15 14
173 786.27 temperature 30 1440 < th dose independent rect. 15 16
175 786.38 temperature 30 1440 < th dose independent rect. 15 10
177 786.51 temperature 30 1440 < th dose independent rect. 15 4
184 786.62 temperature 30 1440 < th dose independent rect. 15 6
188 786.86 temperature 30 1440 < th dose independent rect. 15 21
250 788.58 temperature 30 1440 < th dose independent rect. 9 22
251 788.59 temperature 30 1440 < th dose independent rect. 9 20
253 788.63 temperature 30 1440 < th dose independent rect. 9 18
254 788.63 temperature 30 1440 > th dose dependent no NA NA
348 788.76 temperature 30 1440 < th dose independent rect. 9 10
349 788.78 temperature 30 1440 < th dose independent rect. 9 16
362 789.28 radiation 20 1440 > th dose independent rect. 16 15
368 789.76 temperature 30 1440 < th dose independent rect. 15 19
385 790.55 temperature 30 1440 < th dose independent rect. 17 23
388 790.61 temperature 30 1440 > th dose independent rect. 15 21
404 790.64 temperature 30 1440 > th dose dependent rect. 17 23
416 791.32 temperature 30 1440 > th dose independent rect. 9 10
464 791.97 temperature 30 1440 > th dose independent rect. 15 19
467 792.10 temperature 30 1440 < th dose independent rect. 6 23
468 792.13 temperature 30 1440 < th dose independent rect. 6 21
469 792.14 temperature 30 1440 < th dose independent rect. 22 21
474 792.17 temperature 30 1440 < th dose independent rect. 2 17
476 792.18 temperature 30 1440 < th dose independent rect. 2 23
479 792.22 temperature 30 1440 < th dose independent rect. 4 23
486 792.25 temperature 30 1440 < th dose independent no NA NA
489 792.25 temperature 30 1440 < th dose independent rect. 24 23
496 792.27 temperature 30 1440 < th dose independent rect. 6 13
498 792.28 temperature 30 1440 < th dose independent rect. 6 19
512 792.35 temperature 30 1440 < th dose independent rect. 6 17
517 792.36 temperature 30 1440 < th dose independent rect. 4 15
623 794.11 temperature 30 1440 > th dose independent rect. 17 23
654 795.00 radiation 20 1440 < th dose independent rect. 16 1
674 795.17 radiation 20 1440 < th dose independent rect. 16 8
676 795.25 radiation 20 1440 < th dose independent rect. 16 11
704 795.65 temperature 30 1440 < th dose independent rect. 13 14
705 795.65 temperature 30 1440 < th dose independent rect. 13 16
707 795.71 temperature 30 1440 < th dose independent rect. 13 18
724 795.85 radiation 20 1440 < th dose independent rect. 16 5
725 795.85 temperature 30 1440 < th dose independent rect. 13 12
726 795.87 temperature 30 1440 > th dose independent no NA NA
818 795.89 temperature 30 1440 < th dose independent rect. 13 6
828 796.00 temperature 30 1440 < th dose independent rect. 13 8
831 796.04 radiation 20 1440 < th dose independent rect. 16 15
906 797.62 radiation 20 1440 > th dose independent rect. 16 1
929 797.80 humidity 80 720 < th dose dependent rect. 17 4
954 798.23 temperature 30 1440 > th dose independent rect. 17 19