Os04g0649600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os04g0649600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 76.35 | 0.411 | 10.6 | -0.727 | 0.46 | 0.789 | 0.116 | 0.797 | -0.324 | 6.25 | 29.32 | 3749 | -- | -- |
| 76.4 | 0.407 | 10.6 | -0.565 | 0.458 | 0.878 | 0.127 | -- | -0.304 | 6.23 | 29.47 | 3753 | -- | -- |
| 76.38 | 0.407 | 10.6 | -0.736 | 0.459 | 0.783 | -- | 0.846 | -0.326 | 6.33 | 29.33 | 3726 | -- | -- |
| 76.43 | 0.407 | 10.6 | -0.564 | 0.458 | 0.875 | -- | -- | -0.304 | 6.32 | 29.41 | 3749 | -- | -- |
| 87.14 | 0.435 | 10.6 | -0.661 | -- | 0.871 | -- | 0.548 | -0.297 | -- | 29.3 | 3638 | -- | -- |
| 99.36 | 0.467 | 10.6 | -0.786 | 0.473 | -- | -0.0784 | -- | -0.295 | 7.1 | -- | -- | -- | -- |
| 99.37 | 0.467 | 10.6 | -0.787 | 0.473 | -- | -- | -- | -0.295 | 7.06 | -- | -- | -- | -- |
| 83.26 | 0.425 | 10.6 | -0.539 | -- | 0.908 | -- | -- | -0.181 | -- | 28.7 | 1983 | -- | -- |
| 84.28 | 0.428 | 10.6 | -- | 0.448 | 1 | -- | -- | -0.224 | 6.29 | 29.2 | 3749 | -- | -- |
| 111.18 | 0.493 | 10.6 | -0.778 | -- | -- | -- | -- | -0.286 | -- | -- | -- | -- | -- |
| 115.71 | 0.503 | 10.6 | -- | 0.465 | -- | -- | -- | -0.207 | 7.17 | -- | -- | -- | -- |
| 89.37 | 0.44 | 10.6 | -- | -- | 1.02 | -- | -- | -0.0358 | -- | 28.3 | 1985 | -- | -- |
| 127.15 | 0.526 | 10.6 | -- | -- | -- | -- | -- | -0.2 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 72.83 | radiation | 1.0 | 14400 | < th | dose independent | rect. | 12 | 6 |
| 4 | 72.96 | radiation | 1.0 | 14400 | > th | dose independent | rect. | 11 | 7 |
| 5 | 72.96 | radiation | 1.0 | 14400 | < th | dose independent | rect. | 12 | 15 |
| 9 | 72.97 | radiation | 1.0 | 14400 | < th | dose independent | rect. | 12 | 9 |
| 11 | 72.97 | radiation | 1.0 | 14400 | < th | dose independent | rect. | 12 | 13 |
| 99 | 73.17 | radiation | 1.0 | 14400 | < th | dose independent | sin | 18 | NA |
| 103 | 73.19 | radiation | 1.0 | 14400 | > th | dose independent | sin | 18 | NA |
| 119 | 73.22 | radiation | 1.0 | 14400 | < th | dose independent | rect. | 16 | 2 |
| 166 | 73.36 | radiation | 1.0 | 14400 | < th | dose independent | rect. | 16 | 11 |
| 171 | 73.37 | radiation | 1.0 | 14400 | < th | dose independent | rect. | 16 | 5 |
| 179 | 73.38 | radiation | 1.0 | 14400 | > th | dose independent | rect. | 16 | 2 |
| 182 | 73.38 | radiation | 1.0 | 14400 | < th | dose dependent | rect. | 12 | 6 |
| 260 | 73.51 | radiation | 1.0 | 14400 | < th | dose dependent | rect. | 16 | 2 |
| 276 | 73.62 | radiation | 1.0 | 14400 | < th | dose independent | rect. | 20 | 22 |
| 279 | 73.63 | radiation | 1.0 | 14400 | < th | dose independent | rect. | 5 | 13 |
| 292 | 73.64 | radiation | 1.0 | 14400 | < th | dose dependent | rect. | 12 | 9 |
| 314 | 73.69 | radiation | 1.0 | 14400 | < th | dose independent | no | NA | NA |
| 316 | 73.69 | radiation | 1.0 | 14400 | < th | dose independent | rect. | 5 | 16 |
| 325 | 73.69 | radiation | 1.0 | 14400 | < th | dose independent | rect. | 5 | 20 |
| 333 | 73.69 | radiation | 1.0 | 14400 | < th | dose independent | rect. | 3 | 22 |
| 344 | 73.69 | radiation | 1.0 | 14400 | < th | dose independent | rect. | 16 | 23 |
| 350 | 73.69 | radiation | 1.0 | 14400 | < th | dose dependent | rect. | 12 | 15 |
| 404 | 73.76 | radiation | 1.0 | 14400 | > th | dose independent | no | NA | NA |
| 405 | 73.76 | radiation | 1.0 | 14400 | > th | dose independent | rect. | 5 | 14 |
| 459 | 73.76 | radiation | 1.0 | 14400 | > th | dose independent | rect. | 16 | 23 |
| 551 | 73.88 | radiation | 1.0 | 14400 | < th | dose dependent | sin | 17 | NA |
| 552 | 73.88 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 17 | 12 |
| 590 | 73.92 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 17 | 10 |
| 602 | 73.95 | radiation | 1.0 | 14400 | < th | dose dependent | rect. | 16 | 12 |
| 634 | 74.07 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 20 | 23 |
| 652 | 74.11 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 17 | 20 |
| 672 | 74.17 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 14 | 15 |
| 707 | 74.22 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 14 | 13 |
| 710 | 74.23 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 17 | 22 |
| 711 | 74.24 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 17 | 8 |
| 712 | 74.24 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 17 | 10 |
| 721 | 74.24 | precipitation | 0.1 | 43200 | > th | dose dependent | sin | 14 | NA |
| 726 | 74.25 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 17 | 8 |
| 728 | 74.25 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 17 | 10 |
| 730 | 74.25 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 17 | 8 |
| 731 | 74.25 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 17 | 10 |
| 742 | 74.27 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 12 | 15 |
| 743 | 74.27 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 12 | 17 |
| 766 | 74.34 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 9 | 18 |
| 772 | 74.35 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 4 | 23 |
| 785 | 74.37 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 24 | 19 |
| 789 | 74.38 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 14 | 23 |
| 820 | 74.41 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 6 | 21 |
| 842 | 74.44 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 14 | 21 |
| 880 | 74.51 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 24 | 23 |
| 881 | 74.52 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 17 | 12 |
| 884 | 74.52 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 17 | 12 |
| 887 | 74.52 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 12 | 23 |
| 889 | 74.53 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 17 | 12 |
| 891 | 74.53 | precipitation | 0.1 | 43200 | > th | dose dependent | no | NA | NA |
| 892 | 74.53 | humidity | 90.0 | 43200 | > th | dose dependent | rect. | 21 | 1 |
| 898 | 74.54 | radiation | 1.0 | 14400 | < th | dose dependent | rect. | 5 | 15 |
| 913 | 74.56 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 2 | 23 |
| 961 | 74.64 | radiation | 1.0 | 14400 | < th | dose dependent | rect. | 16 | 23 |