Os04g0649500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os04g0649500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = atmosphere,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 193.87 | 0.654 | 5.21 | -2.36 | 0.793 | -0.162 | 0.225 | -4.28 | -0.58 | 7.22 | 1002 | 11519 | -- | -- |
| 202.46 | 0.663 | 5.14 | -2.13 | 0.838 | -0.881 | 0.679 | -- | -0.563 | 6.91 | 1000 | 11447 | -- | -- |
| 194.01 | 0.649 | 5.21 | -2.35 | 0.792 | -0.163 | -- | -4.27 | -0.581 | 7.23 | 1002 | 11526 | -- | -- |
| 201.25 | 0.661 | 5.16 | -2.13 | 0.805 | -0.965 | -- | -- | -0.617 | 7.25 | 1000 | 11419 | -- | -- |
| 227.19 | 0.702 | 5.23 | -2.33 | -- | -0.166 | -- | -4.24 | -0.566 | -- | 1002 | 11823 | -- | -- |
| 223.97 | 0.702 | 5.14 | -2.33 | 0.799 | -- | 0.229 | -- | -0.528 | 7.2 | -- | -- | -- | -- |
| 224.11 | 0.701 | 5.14 | -2.32 | 0.8 | -- | -- | -- | -0.529 | 7.22 | -- | -- | -- | -- |
| 234.8 | 0.714 | 5.18 | -2.11 | -- | -0.983 | -- | -- | -0.605 | -- | 1000 | 11357 | -- | -- |
| 315.22 | 0.827 | 5.12 | -- | 0.771 | -1.4 | -- | -- | -0.44 | 7.5 | 1001 | 11837 | -- | -- |
| 257.95 | 0.75 | 5.16 | -2.31 | -- | -- | -- | -- | -0.515 | -- | -- | -- | -- | -- |
| 366.22 | 0.895 | 5.08 | -- | 0.777 | -- | -- | -- | -0.27 | 7.41 | -- | -- | -- | -- |
| 347.25 | 0.868 | 5.14 | -- | -- | -1.41 | -- | -- | -0.428 | -- | 1001 | 11908 | -- | -- |
| 398.42 | 0.932 | 5.1 | -- | -- | -- | -- | -- | -0.259 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 189.93 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 20 | 1 |
| 3 | 190.54 | atmosphere | 1005.0 | 14400 | < th | dose independent | rect. | 7 | 1 |
| 5 | 191.14 | atmosphere | 995.0 | 14400 | < th | dose dependent | rect. | 5 | 10 |
| 6 | 191.18 | atmosphere | 995.0 | 14400 | > th | dose independent | rect. | 6 | 10 |
| 13 | 191.50 | humidity | 70.0 | 720 | < th | dose independent | rect. | 18 | 14 |
| 14 | 191.54 | humidity | 70.0 | 720 | > th | dose independent | rect. | 18 | 9 |
| 15 | 191.59 | atmosphere | 995.0 | 14400 | > th | dose independent | rect. | 6 | 7 |
| 17 | 191.61 | atmosphere | 995.0 | 14400 | < th | dose independent | rect. | 5 | 10 |
| 21 | 191.66 | atmosphere | 995.0 | 14400 | < th | dose dependent | rect. | 14 | 8 |
| 30 | 191.74 | atmosphere | 1005.0 | 14400 | > th | dose independent | rect. | 6 | 2 |
| 35 | 191.90 | wind | 5.0 | 14400 | > th | dose dependent | rect. | 14 | 2 |
| 37 | 191.98 | humidity | 70.0 | 720 | > th | dose independent | rect. | 18 | 3 |
| 39 | 192.07 | atmosphere | 995.0 | 14400 | < th | dose independent | rect. | 14 | 8 |
| 48 | 192.08 | humidity | 70.0 | 720 | < th | dose independent | rect. | 18 | 2 |
| 87 | 192.32 | atmosphere | 995.0 | 14400 | > th | dose independent | rect. | 11 | 11 |
| 114 | 192.55 | wind | 7.0 | 14400 | < th | dose independent | rect. | 14 | 2 |
| 120 | 192.63 | atmosphere | 995.0 | 14400 | < th | dose independent | sin | 22 | NA |
| 127 | 192.67 | atmosphere | 995.0 | 14400 | > th | dose independent | sin | 22 | NA |
| 129 | 192.67 | humidity | 70.0 | 720 | > th | dose independent | rect. | 17 | 14 |
| 133 | 192.73 | wind | 7.0 | 14400 | > th | dose independent | rect. | 14 | 2 |
| 158 | 193.00 | atmosphere | 995.0 | 14400 | > th | dose independent | rect. | 9 | 4 |
| 172 | 193.12 | wind | 7.0 | 4320 | < th | dose independent | rect. | 19 | 8 |
| 176 | 193.15 | atmosphere | 995.0 | 14400 | > th | dose independent | rect. | 19 | 21 |
| 180 | 193.17 | atmosphere | 995.0 | 14400 | < th | dose dependent | rect. | 14 | 1 |
| 194 | 193.20 | wind | 7.0 | 4320 | > th | dose independent | rect. | 19 | 8 |
| 200 | 193.23 | atmosphere | 995.0 | 14400 | < th | dose dependent | sin | 22 | NA |
| 204 | 193.25 | wind | 7.0 | 4320 | > th | dose dependent | rect. | 19 | 8 |
| 215 | 193.34 | atmosphere | 995.0 | 14400 | > th | dose independent | rect. | 10 | 8 |
| 231 | 193.39 | atmosphere | 995.0 | 14400 | > th | dose independent | rect. | 15 | 3 |
| 233 | 193.40 | atmosphere | 995.0 | 14400 | > th | dose independent | rect. | 15 | 1 |
| 239 | 193.41 | atmosphere | 995.0 | 14400 | > th | dose independent | rect. | 13 | 5 |
| 241 | 193.41 | humidity | 70.0 | 720 | < th | dose dependent | rect. | 18 | 14 |
| 242 | 193.42 | atmosphere | 995.0 | 14400 | > th | dose independent | rect. | 12 | 1 |
| 243 | 193.42 | atmosphere | 995.0 | 14400 | < th | dose independent | rect. | 14 | 1 |
| 279 | 193.50 | atmosphere | 995.0 | 14400 | > th | dose independent | rect. | 13 | 3 |
| 455 | 193.73 | humidity | 70.0 | 720 | > th | dose independent | rect. | 17 | 6 |
| 458 | 193.73 | radiation | 1.0 | 14400 | < th | dose dependent | rect. | 23 | 1 |
| 484 | 193.82 | radiation | 1.0 | 14400 | < th | dose dependent | rect. | 19 | 7 |
| 517 | 193.93 | wind | 5.0 | 14400 | > th | dose independent | rect. | 11 | 5 |
| 547 | 194.10 | humidity | 70.0 | 720 | < th | dose dependent | rect. | 18 | 1 |
| 604 | 194.26 | wind | 5.0 | 14400 | > th | dose independent | rect. | 11 | 11 |
| 609 | 194.28 | wind | 5.0 | 14400 | > th | dose independent | rect. | 11 | 7 |
| 636 | 194.35 | humidity | 60.0 | 720 | > th | dose dependent | rect. | 18 | 3 |
| 640 | 194.38 | atmosphere | 1005.0 | 14400 | < th | dose independent | rect. | 9 | 1 |
| 641 | 194.38 | wind | 5.0 | 14400 | < th | dose independent | rect. | 11 | 5 |
| 720 | 194.57 | humidity | 70.0 | 720 | < th | dose dependent | rect. | 17 | 16 |
| 722 | 194.58 | wind | 7.0 | 4320 | > th | dose independent | rect. | 20 | 3 |
| 729 | 194.59 | radiation | 1.0 | 14400 | < th | dose dependent | rect. | 19 | 9 |
| 737 | 194.63 | radiation | 1.0 | 14400 | < th | dose dependent | rect. | 1 | 1 |
| 748 | 194.65 | temperature | 25.0 | 720 | > th | dose dependent | rect. | 17 | 7 |
| 782 | 194.76 | wind | 5.0 | 14400 | < th | dose independent | rect. | 10 | 12 |
| 796 | 194.78 | temperature | 30.0 | 720 | > th | dose independent | rect. | 18 | 1 |
| 831 | 194.84 | wind | 5.0 | 14400 | > th | dose independent | sin | 22 | NA |
| 878 | 194.92 | atmosphere | 995.0 | 14400 | < th | dose independent | rect. | 18 | 1 |
| 890 | 194.92 | atmosphere | 995.0 | 14400 | < th | dose dependent | rect. | 18 | 1 |
| 893 | 194.93 | wind | 5.0 | 14400 | < th | dose independent | rect. | 11 | 7 |
| 933 | 194.97 | wind | 5.0 | 14400 | > th | dose independent | rect. | 5 | 14 |
| 962 | 195.01 | atmosphere | 995.0 | 14400 | > th | dose independent | no | NA | NA |
| 972 | 195.01 | atmosphere | 995.0 | 14400 | > th | dose independent | rect. | 12 | 23 |
| 973 | 195.01 | atmosphere | 995.0 | 14400 | > th | dose independent | rect. | 14 | 23 |