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Os04g0649100

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Pathogenesis-related transcriptional factor and ERF domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 9.07 (0.0224) R2 : 0.504
β1 : -- (--) R2dD : -- R2D : --
β2 : 1.24 (0.058) R2dC : 0.498 R2C : 0.498
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.0942 (0.0471) R2dN8 : 0.00563 R2N8 : 0.00592
σ : 0.422
deviance : 81.27
__
_____
C
peak time of C : 4.73
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
68.21 0.388 9.05 -0.185 1.2 1.07 0.368 -0.363 0.201 5.08 59.04 1029 -- --
68.28 0.385 9.05 -0.174 1.2 0.994 0.367 -- 0.2 5.08 59.65 1034 -- --
68.54 0.386 9.05 -0.19 1.19 1.09 -- -0.442 0.2 5.06 58.56 1035 -- --
68.6 0.386 9.05 -0.172 1.2 0.99 -- -- 0.197 5.04 59.29 1045 -- --
142.27 0.556 9.06 -0.215 -- 1.46 -- -0.893 0.277 -- 58 1116 -- --
80.95 0.422 9.07 -0.0113 1.24 -- 0.348 -- 0.0945 4.74 -- -- -- --
81.27 0.422 9.07 -0.0131 1.24 -- -- -- 0.0927 4.72 -- -- -- --
142.57 0.556 9.06 -0.168 -- 1.17 -- -- 0.256 -- 59.99 1127 -- --
69.35 0.388 9.05 -- 1.2 0.938 -- -- 0.206 5.02 60 1036 -- --
162.68 0.596 9.09 0.0338 -- -- -- -- 0.125 -- -- -- -- --
81.27 0.422 9.07 -- 1.24 -- -- -- 0.0942 4.73 -- -- -- --
143.28 0.557 9.05 -- -- 1.09 -- -- 0.271 -- 60.62 1125 -- --
162.71 0.595 9.09 -- -- -- -- -- 0.121 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 64.03 humidity 50.0 720 > th dose independent rect. 14 10
2 64.07 humidity 50.0 720 > th dose independent rect. 5 19
3 64.20 wind 5.0 90 < th dose independent rect. 3 18
4 64.24 humidity 50.0 720 > th dose independent rect. 5 12
6 64.44 wind 7.0 720 < th dose independent rect. 24 21
7 64.68 humidity 50.0 720 > th dose independent rect. 21 20
9 65.03 wind 7.0 720 < th dose independent rect. 1 19
12 65.09 humidity 50.0 720 > th dose independent rect. 12 5
20 65.64 wind 7.0 90 < th dose dependent rect. 3 18
23 65.76 wind 7.0 720 < th dose independent rect. 15 14
40 66.36 humidity 50.0 720 > th dose independent rect. 12 14
49 66.60 wind 5.0 90 < th dose independent rect. 11 10
55 66.74 humidity 50.0 720 > th dose independent rect. 12 21
63 66.96 wind 9.0 270 < th dose dependent rect. 24 21
70 67.04 wind 7.0 720 < th dose independent rect. 17 11
73 67.08 humidity 50.0 720 > th dose independent rect. 14 18
77 67.10 wind 1.0 43200 < th dose dependent rect. 2 1
82 67.18 wind 7.0 720 < th dose independent rect. 24 14
84 67.23 humidity 70.0 720 > th dose independent rect. 19 6
94 67.41 wind 3.0 90 < th dose independent rect. 3 2
100 67.50 wind 9.0 270 < th dose dependent rect. 24 12
101 67.52 humidity 50.0 720 > th dose dependent rect. 24 5
109 67.61 humidity 50.0 720 > th dose independent rect. 15 1
111 67.61 wind 9.0 14400 > th dose dependent rect. 17 20
112 67.62 wind 5.0 90 < th dose dependent rect. 3 2
116 67.66 wind 7.0 720 < th dose independent rect. 17 19
122 67.70 wind 9.0 43200 > th dose dependent rect. 13 6
128 67.74 wind 9.0 14400 > th dose dependent sin 13 NA
139 67.88 atmosphere 1000.0 14400 > th dose independent rect. 15 1
143 67.90 atmosphere 1000.0 14400 < th dose independent rect. 15 1
146 67.92 precipitation 0.1 90 < th dose independent rect. 3 2
147 67.92 precipitation 0.1 90 < th dose dependent rect. 3 2
155 67.97 precipitation 0.1 720 < th dose independent rect. 17 3
156 67.97 precipitation 0.1 720 < th dose dependent rect. 17 3
163 67.99 wind 9.0 30 < th dose dependent rect. 3 12
164 68.00 wind 7.0 14400 < th dose independent rect. 15 1
166 68.00 atmosphere 1000.0 14400 > th dose independent rect. 13 4
187 68.10 wind 9.0 43200 > th dose independent rect. 13 6
195 68.14 wind 1.0 720 > th dose independent rect. 17 4
197 68.14 wind 9.0 720 < th dose independent rect. 9 20
198 68.14 wind 9.0 14400 > th dose dependent rect. 15 15
204 68.15 wind 9.0 14400 > th dose dependent rect. 15 6
215 68.18 wind 7.0 270 < th dose independent rect. 24 12
218 68.19 humidity 70.0 720 < th dose dependent rect. 17 18
223 68.21 wind 7.0 720 < th dose independent rect. 2 10
224 68.21 atmosphere 1005.0 14400 < th dose dependent rect. 15 1
225 68.21 wind 7.0 43200 > th dose dependent rect. 13 2
243 68.24 wind 9.0 43200 < th dose independent rect. 13 6
245 68.24 humidity 60.0 90 > th dose dependent rect. 3 2
253 68.26 radiation 40.0 43200 > th dose independent rect. 10 1
262 68.27 wind 5.0 10 < th dose dependent rect. 3 3
285 68.33 wind 7.0 14400 > th dose independent rect. 15 1
286 68.33 radiation 40.0 43200 < th dose independent rect. 9 2
320 68.39 temperature 10.0 90 > th dose dependent rect. 3 2
327 68.41 radiation 1.0 90 < th dose independent rect. 3 4
332 68.41 wind 9.0 14400 > th dose independent rect. 17 19
342 68.42 wind 9.0 14400 > th dose dependent rect. 17 12
387 68.48 radiation 10.0 43200 < th dose independent rect. 9 1
404 68.49 humidity 90.0 720 < th dose dependent rect. 17 2
420 68.52 atmosphere 1000.0 14400 > th dose independent sin 17 NA
477 68.55 radiation 1.0 90 < th dose dependent rect. 3 10
480 68.56 radiation 1.0 90 < th dose independent rect. 3 2
487 68.56 radiation 1.0 90 < th dose dependent rect. 3 5
489 68.56 wind 9.0 14400 > th dose dependent rect. 17 7
499 68.57 atmosphere 1000.0 14400 < th dose independent sin 17 NA
503 68.57 precipitation 0.1 720 < th dose independent rect. 10 9
517 68.57 temperature 15.0 90 > th dose independent rect. 5 22
520 68.57 precipitation 0.1 720 < th dose dependent rect. 10 9
526 68.58 temperature 10.0 90 > th dose independent rect. 3 2
528 68.58 temperature 30.0 90 < th dose independent rect. 3 2
529 68.58 humidity 50.0 90 > th dose independent rect. 3 2
532 68.58 atmosphere 995.0 90 > th dose independent rect. 3 2
533 68.58 atmosphere 1010.0 90 < th dose independent rect. 3 2
543 68.58 humidity 60.0 720 < th dose independent rect. 16 19
546 68.58 atmosphere 1005.0 14400 < th dose dependent rect. 3 2
547 68.58 radiation 10.0 90 < th dose dependent rect. 3 2
557 68.59 temperature 10.0 270 > th dose independent rect. 5 11
558 68.59 atmosphere 1015.0 270 < th dose independent rect. 5 11
561 68.59 temperature 10.0 270 > th dose independent rect. 16 13
562 68.59 radiation 40.0 270 < th dose independent rect. 16 13
566 68.59 atmosphere 1005.0 14400 < th dose dependent rect. 17 1
607 68.63 radiation 1.0 90 < th dose independent rect. 3 10
612 68.63 radiation 40.0 43200 < th dose dependent rect. 9 1
621 68.64 radiation 1.0 90 < th dose independent rect. 3 7
666 68.66 wind 1.0 14400 < th dose dependent rect. 12 1
681 68.68 humidity 70.0 720 > th dose independent rect. 17 7
702 68.70 atmosphere 1000.0 14400 < th dose independent rect. 24 1
716 68.71 precipitation 0.1 270 < th dose independent rect. 5 11
724 68.71 precipitation 0.1 270 < th dose dependent rect. 5 11
725 68.71 atmosphere 1005.0 14400 < th dose dependent rect. 12 18
782 68.75 radiation 40.0 43200 < th dose independent rect. 4 7
806 68.76 precipitation 0.1 270 < th dose independent rect. 16 13
810 68.76 radiation 40.0 43200 < th dose independent rect. 20 15
816 68.76 radiation 10.0 43200 > th dose dependent rect. 10 1
823 68.76 precipitation 0.1 270 < th dose dependent rect. 16 13
854 68.77 atmosphere 1005.0 14400 < th dose dependent sin 19 NA
856 68.77 wind 5.0 4320 > th dose dependent rect. 17 1
885 68.78 radiation 30.0 43200 > th dose dependent rect. 9 2
892 68.78 atmosphere 1005.0 14400 < th dose dependent rect. 2 16
972 68.81 atmosphere 1000.0 14400 > th dose independent rect. 24 1