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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os04g0648600

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 2.97 (0.0287) R2 : 0.00229
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.0618 (0.0605) R2dN8 : 0.00295 R2N8 : 0.00229
σ : 0.541
deviance : 134.39
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
128.95 0.534 2.95 0.103 0.455 0.403 -0.49 -0.13 0.0877 12.5 9.923 264 -- --
128.98 0.529 2.96 0.0939 0.471 0.411 -0.436 -- 0.0769 12.4 9.93 254 -- --
129.16 0.529 2.96 0.102 0.439 0.375 -- 0.268 0.083 12.3 9.925 253 -- --
129.49 0.53 2.96 0.0902 0.438 0.376 -- -- 0.0833 12.2 9.92 253 -- --
131.04 0.533 2.96 0.132 -- 0.263 -- -0.228 0.117 -- 21.02 758 -- --
131.79 0.538 2.96 0.106 0.203 -- -0.0218 -- 0.0715 8.41 -- -- -- --
131.79 0.538 2.96 0.105 0.204 -- -- -- 0.0715 8.36 -- -- -- --
130.97 0.533 2.96 0.139 -- 0.263 -- -- 0.106 -- 22.16 753 -- --
129.7 0.53 2.96 -- 0.44 0.383 -- -- 0.0784 12.2 9.924 254 -- --
134.09 0.541 2.97 0.106 -- -- -- -- 0.0736 -- -- -- -- --
132.08 0.538 2.96 -- 0.204 -- -- -- 0.0598 8.32 -- -- -- --
131.46 0.534 2.96 -- -- 0.266 -- -- 0.0982 -- 22.26 753 -- --
134.39 0.541 2.97 -- -- -- -- -- 0.0618 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 120.30 wind 1.0 1440 < th dose dependent rect. 17 1
2 120.34 wind 1.0 1440 < th dose independent rect. 17 1
3 120.35 wind 1.0 1440 > th dose independent rect. 17 1
4 120.37 precipitation 0.1 1440 > th dose independent rect. 12 1
6 120.37 precipitation 0.1 1440 > th dose dependent rect. 12 1
8 120.63 radiation 10.0 90 < th dose dependent rect. 10 2
14 123.08 wind 9.0 30 < th dose independent rect. 5 23
15 123.21 wind 3.0 30 < th dose dependent rect. 4 1
17 123.46 humidity 80.0 30 > th dose dependent rect. 4 1
18 123.48 atmosphere 1010.0 30 < th dose dependent rect. 4 1
19 123.54 humidity 90.0 30 > th dose independent rect. 4 1
27 123.71 precipitation 0.1 30 < th dose independent rect. 5 23
28 123.71 precipitation 0.1 30 < th dose dependent rect. 5 23
29 123.72 temperature 30.0 30 < th dose dependent rect. 4 1
30 123.75 temperature 20.0 30 > th dose independent rect. 4 1
31 123.75 atmosphere 1005.0 30 > th dose independent rect. 4 1
32 123.79 wind 3.0 30 < th dose independent rect. 4 1
37 123.80 temperature 10.0 30 > th dose independent rect. 4 1
39 123.80 temperature 30.0 30 < th dose independent rect. 4 1
40 123.80 humidity 50.0 30 > th dose independent rect. 4 1
45 123.80 atmosphere 1010.0 30 < th dose independent rect. 4 1
47 123.80 radiation 1.0 30 < th dose independent rect. 4 1
52 123.80 precipitation 0.1 30 < th dose independent rect. 4 1
53 123.80 temperature 10.0 30 > th dose independent rect. 5 23
54 123.80 radiation 30.0 30 < th dose dependent rect. 4 1
56 123.80 precipitation 0.1 30 < th dose dependent rect. 4 1
57 123.81 radiation 10.0 30 < th dose dependent rect. 4 1
59 123.86 temperature 10.0 30 > th dose dependent rect. 4 1
63 123.92 temperature 25.0 90 > th dose dependent rect. 4 1
66 123.96 atmosphere 995.0 30 > th dose dependent rect. 4 1
69 124.01 atmosphere 995.0 30 > th dose independent rect. 5 23
71 124.07 humidity 90.0 90 < th dose dependent rect. 4 1
81 124.51 radiation 1.0 10 < th dose independent rect. 4 13
86 124.60 humidity 90.0 10 < th dose independent rect. 4 1
132 124.98 temperature 25.0 10 > th dose independent rect. 2 3
144 125.17 radiation 10.0 90 < th dose independent rect. 10 2
161 125.43 wind 7.0 1440 < th dose independent rect. 5 1
163 125.43 temperature 10.0 1440 > th dose independent rect. 5 1
166 125.43 temperature 30.0 1440 < th dose independent rect. 5 1
170 125.43 humidity 50.0 1440 > th dose independent rect. 5 1
179 125.43 atmosphere 995.0 1440 > th dose independent rect. 5 1
180 125.43 atmosphere 1015.0 1440 < th dose independent rect. 5 1
181 125.43 radiation 20.0 1440 < th dose independent rect. 5 1
191 125.43 temperature 10.0 1440 > th dose independent rect. 6 23
194 125.44 radiation 10.0 270 < th dose independent rect. 8 21
199 125.49 wind 1.0 30 > th dose dependent rect. 4 1
227 125.68 atmosphere 1005.0 720 > th dose dependent rect. 4 1
233 125.79 radiation 1.0 30 < th dose dependent rect. 4 13
255 126.04 humidity 50.0 30 > th dose independent rect. 5 23
259 126.07 wind 1.0 30 > th dose independent rect. 4 1
260 126.07 radiation 40.0 270 < th dose dependent rect. 9 20
276 126.20 atmosphere 1005.0 10 > th dose independent rect. 4 14
280 126.24 atmosphere 995.0 720 > th dose dependent rect. 1 4
296 126.39 temperature 25.0 720 > th dose independent rect. 4 1
299 126.43 radiation 10.0 4320 < th dose independent rect. 11 1
301 126.44 wind 9.0 30 < th dose dependent rect. 5 23
302 126.45 radiation 10.0 4320 < th dose dependent rect. 11 1
346 126.59 atmosphere 1005.0 10 > th dose independent rect. 4 12
348 126.60 atmosphere 1010.0 720 < th dose independent rect. 7 1
370 126.75 atmosphere 1005.0 10 > th dose independent rect. 4 9
371 126.75 atmosphere 1015.0 30 < th dose independent rect. 5 23
383 126.80 temperature 25.0 1440 > th dose independent rect. 1 4
393 126.82 atmosphere 1000.0 30 > th dose dependent rect. 11 7
402 126.86 temperature 10.0 30 > th dose dependent rect. 5 23
410 126.88 temperature 25.0 720 < th dose independent rect. 22 9
411 126.89 atmosphere 1005.0 10 > th dose independent rect. 11 7
418 126.90 atmosphere 1000.0 10 > th dose dependent rect. 4 14
477 127.04 atmosphere 1000.0 270 > th dose dependent rect. 24 16
505 127.12 atmosphere 1005.0 720 > th dose dependent rect. 1 11
517 127.15 atmosphere 995.0 30 > th dose dependent rect. 11 10
519 127.16 wind 3.0 30 < th dose dependent rect. 8 1
533 127.18 radiation 30.0 270 < th dose dependent rect. 14 15
538 127.19 atmosphere 1005.0 90 > th dose dependent rect. 11 5
549 127.21 temperature 25.0 720 < th dose independent rect. 23 2
555 127.22 wind 9.0 14400 > th dose independent rect. 1 1
558 127.22 radiation 10.0 270 < th dose independent rect. 13 16
560 127.22 wind 9.0 14400 > th dose dependent rect. 1 1
565 127.23 temperature 30.0 90 < th dose independent rect. 11 18
566 127.23 humidity 90.0 10 < th dose dependent rect. 4 1
569 127.24 atmosphere 1005.0 10 > th dose independent rect. 11 2
577 127.25 temperature 25.0 1440 > th dose independent rect. 1 1
581 127.25 temperature 25.0 270 > th dose dependent rect. 1 5
639 127.35 atmosphere 1005.0 10 > th dose independent rect. 11 5
643 127.36 atmosphere 1010.0 720 < th dose independent rect. 5 4
650 127.37 humidity 50.0 720 > th dose independent rect. 5 12
669 127.40 temperature 25.0 1440 < th dose independent rect. 1 4
704 127.46 radiation 30.0 90 < th dose dependent rect. 3 9
711 127.47 radiation 30.0 720 < th dose dependent rect. 1 11
721 127.49 atmosphere 1005.0 10 > th dose independent rect. 4 17
722 127.49 radiation 10.0 720 < th dose independent rect. 17 19
724 127.49 radiation 30.0 90 < th dose dependent rect. 3 13
726 127.50 temperature 25.0 4320 > th dose independent rect. 22 4
729 127.50 atmosphere 1005.0 10 > th dose independent rect. 11 19
754 127.54 radiation 30.0 30 < th dose independent rect. 12 1
766 127.55 precipitation 0.1 720 < th dose independent rect. 17 12
771 127.55 precipitation 0.1 720 < th dose dependent rect. 17 12
772 127.56 temperature 25.0 4320 > th dose independent rect. 23 1
775 127.56 radiation 10.0 270 < th dose independent rect. 8 9
778 127.56 radiation 30.0 720 < th dose dependent rect. 9 3
797 127.58 atmosphere 1005.0 90 > th dose dependent rect. 11 2
800 127.58 radiation 30.0 720 < th dose dependent rect. 17 19
812 127.60 wind 9.0 720 < th dose independent rect. 5 12
821 127.61 radiation 10.0 720 < th dose independent rect. 8 4
854 127.64 wind 1.0 10 < th dose independent rect. 7 2
856 127.64 temperature 25.0 4320 > th dose independent rect. 21 8
858 127.64 humidity 60.0 30 > th dose independent rect. 11 18
886 127.67 temperature 25.0 4320 < th dose independent rect. 22 7
892 127.68 radiation 1.0 10 < th dose independent rect. 16 1
912 127.70 atmosphere 1015.0 720 < th dose dependent rect. 5 1
928 127.72 temperature 25.0 1440 < th dose independent rect. 1 1
950 127.74 humidity 90.0 90 > th dose independent rect. 14 1
954 127.74 humidity 90.0 90 > th dose dependent rect. 14 1
960 127.74 temperature 10.0 90 > th dose dependent rect. 5 6
983 127.76 atmosphere 995.0 10 > th dose dependent rect. 11 19
987 127.77 radiation 1.0 30 > th dose independent rect. 5 6