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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os04g0648400

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Leucine rich repeat, N-terminal domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.12 (0.0429) R2 : 0.183
β1 : 0.382 (0.157) R2dD : 0.00964 R2D : 0.012
β2 : -- (--) R2dC : -- R2C : --
β3 : 11.4 (1.37) R2dE : 0.611 R2E : -0.21
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -27.8 (4.22) R2dD*E : 0.367 R2D*E : -0.488
γ1 : -0.235 (0.0907) R2dN8 : 0.0168 R2N8 : 0.0216
σ : 0.794
deviance : 290.38
__
_____
C
peak time of C : --
E
wheather : wind
threshold : 0.8597
memory length : 30
response mode : < th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 12.7
open length of G : 10.9

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = wind, response mode = < th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
287.55 0.797 3.14 0.341 0.0692 11.5 1.46 -28.3 -0.241 17.9 0.9257 33 12.6 11
312.33 0.829 3.09 0.483 0.0912 4.34 1.39 -- -0.284 17.7 1.038 44 12.6 10.6
290.62 0.794 3.13 0.415 0.0661 11.5 -- -27.7 -0.234 17.3 0.8922 30 12.7 10.9
315.64 0.833 3.09 0.469 0.18 4.55 -- -- -0.279 21.5 1.038 44 12.6 10.6
290.38 0.794 3.12 0.382 -- 11.4 -- -27.8 -0.235 -- 0.8597 30 12.7 10.9
331.29 0.853 3.09 0.532 0.112 -- 1.61 -- -0.293 17.4 -- -- -- --
336.6 0.859 3.09 0.524 0.182 -- -- -- -0.288 20.5 -- -- -- --
317.53 0.834 3.08 0.47 -- 4.53 -- -- -0.28 -- 1.038 44 12.6 10.6
321.4 0.84 3.1 -- 0.18 4.7 -- -- -0.331 21.7 1.038 44 12.6 10.6
338.46 0.86 3.09 0.524 -- -- -- -- -0.289 -- -- -- -- --
343.85 0.867 3.1 -- 0.181 -- -- -- -0.346 20.8 -- -- -- --
323.33 0.84 3.1 -- -- 4.68 -- -- -0.332 -- 1.038 44 12.6 10.6
345.7 0.868 3.1 -- -- -- -- -- -0.347 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 305.57 wind 1.0 30 < th dose dependent rect. 13 11
5 306.71 wind 1.0 30 < th dose dependent rect. 10 14
9 307.70 wind 1.0 30 < th dose dependent rect. 5 11
17 309.23 wind 1.0 30 < th dose independent rect. 5 11
25 312.76 wind 1.0 10 < th dose independent rect. 14 2
27 312.76 wind 1.0 10 < th dose dependent rect. 14 2
29 312.99 wind 1.0 90 < th dose dependent rect. 5 1
30 313.15 wind 1.0 30 < th dose dependent sin 19 NA
65 313.95 wind 1.0 90 < th dose independent rect. 12 1
66 313.97 precipitation 0.1 90 > th dose independent rect. 5 2
67 313.97 precipitation 0.1 90 > th dose dependent rect. 5 2
68 313.98 wind 1.0 90 < th dose dependent rect. 13 1
147 315.45 wind 1.0 270 < th dose dependent rect. 12 11
150 315.63 wind 1.0 30 < th dose dependent rect. 10 6
154 315.68 wind 1.0 90 < th dose independent rect. 5 1
166 316.30 wind 1.0 30 > th dose independent sin 0 NA
180 316.60 wind 1.0 30 < th dose independent rect. 5 18
183 316.68 wind 1.0 30 < th dose dependent sin 0 NA
184 316.69 wind 1.0 30 < th dose independent sin 0 NA
197 317.17 wind 1.0 270 < th dose independent rect. 12 11
202 317.27 wind 1.0 30 < th dose dependent rect. 5 18
203 317.29 wind 1.0 270 < th dose dependent rect. 22 1
213 317.42 precipitation 0.1 1440 > th dose independent rect. 19 1
229 317.59 precipitation 0.1 1440 > th dose dependent rect. 18 8
234 317.68 precipitation 0.1 1440 > th dose dependent rect. 19 4
242 317.75 precipitation 0.1 1440 > th dose dependent rect. 19 2
281 318.19 precipitation 0.1 1440 > th dose independent rect. 18 5
285 318.29 precipitation 0.1 1440 > th dose independent rect. 18 8
287 318.34 wind 1.0 30 < th dose independent rect. 1 14
288 318.34 wind 1.0 30 < th dose dependent rect. 22 2
308 318.62 wind 1.0 30 < th dose dependent rect. 1 14
323 318.75 wind 1.0 270 < th dose independent rect. 22 1
356 318.90 wind 1.0 30 < th dose dependent rect. 5 22
376 318.99 wind 1.0 30 < th dose independent rect. 3 12
383 319.05 precipitation 0.1 1440 < th dose independent rect. 18 6
384 319.05 precipitation 0.1 1440 < th dose dependent rect. 18 6
385 319.06 precipitation 0.1 1440 < th dose independent rect. 19 2
386 319.06 precipitation 0.1 1440 < th dose dependent rect. 19 2
430 319.38 precipitation 0.1 1440 < th dose independent rect. 18 8
431 319.38 precipitation 0.1 1440 < th dose dependent rect. 18 8
447 319.54 wind 1.0 30 > th dose independent rect. 4 12
466 319.75 wind 1.0 10 > th dose independent rect. 7 9
476 319.82 wind 1.0 30 < th dose independent rect. 5 22
485 319.89 precipitation 0.1 270 > th dose independent rect. 2 4
487 319.92 humidity 90.0 1440 > th dose dependent rect. 19 1
516 320.10 wind 1.0 1440 < th dose independent rect. 18 1
560 320.33 precipitation 0.1 1440 < th dose independent rect. 16 3
562 320.33 precipitation 0.1 1440 < th dose dependent rect. 16 3
582 320.44 precipitation 0.1 270 > th dose dependent rect. 2 4
585 320.46 wind 1.0 1440 > th dose independent rect. 18 1
634 320.65 wind 1.0 30 > th dose independent rect. 21 19
650 320.75 humidity 60.0 30 < th dose independent rect. 17 1
685 320.99 wind 1.0 1440 < th dose dependent rect. 18 1
712 321.12 wind 1.0 30 > th dose independent rect. 18 23
715 321.12 wind 1.0 30 < th dose dependent rect. 3 12
737 321.18 wind 1.0 30 < th dose independent rect. 5 6
739 321.19 radiation 40.0 90 < th dose independent rect. 11 10
769 321.39 wind 1.0 720 > th dose independent rect. 5 2
773 321.41 humidity 50.0 270 < th dose dependent rect. 17 17
785 321.49 wind 1.0 270 < th dose dependent rect. 17 6
787 321.50 temperature 25.0 30 > th dose independent rect. 13 8
801 321.53 humidity 60.0 30 < th dose dependent rect. 17 1
986 321.73 wind 1.0 270 > th dose independent rect. 18 22