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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os04g0648200

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Leucine-rich repeat, plant specific containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 4.34 (0.0369) R2 : 0.618
β1 : 2.81 (0.135) R2dD : 0.377 R2D : 0.282
β2 : 1.3 (0.0928) R2dC : 0.176 R2C : 0.0805
β3 : 1.98 (0.149) R2dE : 0.16 R2E : 0.0111
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.761 (0.079) R2dN8 : 0.105 R2N8 : -0.000552
σ : 0.689
deviance : 218.76
__
_____
C
peak time of C : 2.12
E
wheather : humidity
threshold : 55.2
memory length : 1283
response mode : > th
dose dependency : dose dependent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
209.51 0.68 4.34 2.49 1.22 1.79 0.253 2.5 0.742 2.2 59.87 1334 -- --
218.75 0.689 4.34 2.81 1.28 1.96 0.061 -- 0.761 2.14 55.28 1294 -- --
209.67 0.674 4.34 2.5 1.25 1.79 -- 2.45 0.736 2.19 59.46 1314 -- --
218.76 0.689 4.34 2.81 1.3 1.98 -- -- 0.761 2.12 55.2 1283 -- --
253.76 0.742 4.31 2.56 -- 2.17 -- 1.84 0.862 -- 63.37 1669 -- --
303.04 0.816 4.36 2.71 0.978 -- -0.246 -- 0.659 2.28 -- -- -- --
303.26 0.816 4.36 2.72 0.977 -- -- -- 0.661 2.23 -- -- -- --
256.81 0.746 4.31 2.74 -- 2.21 -- -- 0.866 -- 62.16 1677 -- --
409.25 0.942 4.34 -- 1.15 2.47 -- -- 0.714 2.32 80.78 1369 -- --
360.04 0.887 4.35 2.76 -- -- -- -- 0.684 -- -- -- -- --
498.32 1.04 4.42 -- 1.03 -- -- -- 0.358 2.29 -- -- -- --
443.86 0.981 4.34 -- -- 2.96 -- -- 0.719 -- 76.19 1694 -- --
561.2 1.11 4.42 -- -- -- -- -- 0.378 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 208.66 humidity 80 1440 < th dose independent sin 1 NA
3 209.45 humidity 80 1440 > th dose independent sin 0 NA
6 209.68 humidity 80 1440 < th dose independent rect. 6 15
7 209.70 humidity 80 1440 < th dose independent rect. 7 9
8 209.76 humidity 80 1440 > th dose independent rect. 6 15
26 210.30 humidity 60 1440 > th dose dependent rect. 6 20
32 210.52 humidity 80 1440 > th dose independent rect. 6 10
42 210.70 humidity 60 1440 > th dose dependent rect. 18 22
59 210.92 humidity 60 1440 > th dose dependent rect. 1 20
64 211.02 humidity 70 1440 > th dose dependent rect. 6 15
101 211.38 humidity 60 1440 > th dose dependent sin 0 NA
158 211.85 humidity 60 1440 > th dose dependent no NA NA
159 211.85 humidity 60 1440 > th dose dependent rect. 9 23
187 212.21 humidity 70 1440 > th dose dependent rect. 6 10
198 212.28 humidity 60 1440 > th dose dependent rect. 13 23
225 212.49 humidity 60 1440 > th dose dependent rect. 5 12
522 214.83 temperature 25 14400 > th dose dependent rect. 13 1
546 215.02 wind 3 43200 > th dose independent rect. 3 7
602 215.49 humidity 60 1440 > th dose dependent rect. 10 4
625 215.69 wind 3 43200 > th dose independent rect. 7 2
628 215.69 humidity 90 1440 < th dose dependent rect. 18 23
632 215.72 humidity 70 1440 > th dose independent rect. 18 22
663 215.89 temperature 30 14400 < th dose independent rect. 14 1
667 215.91 humidity 70 14400 < th dose independent rect. 18 1
669 215.93 wind 3 43200 < th dose independent rect. 3 8
675 215.94 humidity 90 1440 < th dose dependent rect. 13 23
687 216.08 wind 3 43200 > th dose dependent rect. 5 2
728 216.27 humidity 90 1440 < th dose dependent rect. 16 23
755 216.41 temperature 25 14400 > th dose dependent rect. 24 18
776 216.48 temperature 25 14400 > th dose dependent rect. 11 14
788 216.50 temperature 25 14400 > th dose dependent sin 22 NA
789 216.50 humidity 60 1440 > th dose dependent rect. 11 2
865 216.65 humidity 90 1440 < th dose dependent rect. 9 23
875 216.66 humidity 90 1440 < th dose dependent rect. 5 23
896 216.70 humidity 90 1440 < th dose dependent no NA NA
920 216.75 humidity 90 1440 < th dose dependent rect. 3 23
958 216.82 humidity 90 1440 < th dose dependent rect. 24 23
987 216.86 humidity 90 1440 < th dose dependent rect. 22 23