Os04g0647900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Leucine rich repeat, N-terminal domain containing protein.
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Os04g0647900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Leucine rich repeat, N-terminal domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = > th, dose dependency = dose dependent, type of G = rect.)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 403.14 | 0.943 | 6.34 | 1.44 | 1.06 | 1.75 | -1.37 | -0.0181 | 0.771 | 5.51 | 66.73 | 62 | 5.23 | 14 |
| 401.92 | 0.934 | 6.35 | 1.45 | 1.11 | 1.71 | -1.26 | -- | 0.774 | 5.46 | 65.78 | 46 | 5.33 | 14.1 |
| 406.72 | 0.939 | 6.34 | 1.48 | 1.09 | 1.76 | -- | -0.0571 | 0.8 | 5.39 | 65.43 | 47 | 5.33 | 14.1 |
| 406.15 | 0.939 | 6.34 | 1.43 | 1.05 | 1.71 | -- | -- | 0.782 | 5.59 | 66.24 | 44 | 5.39 | 14.1 |
| 454.99 | 0.993 | 6.32 | 1.55 | -- | 2.04 | -- | 0.078 | 0.904 | -- | 69.34 | 48 | 5.2 | 14 |
| 493.11 | 1.04 | 6.32 | 1.38 | 1.43 | -- | -1.18 | -- | 0.762 | 6.84 | -- | -- | -- | -- |
| 496.63 | 1.04 | 6.32 | 1.36 | 1.42 | -- | -- | -- | 0.766 | 6.93 | -- | -- | -- | -- |
| 440.89 | 0.978 | 6.34 | 1.5 | -- | 2.18 | -- | -- | 0.85 | -- | 69.82 | 60 | 5.15 | 12.1 |
| 460.27 | 0.999 | 6.37 | -- | 1.11 | 1.66 | -- | -- | 0.627 | 5.52 | 65.34 | 43 | 5.39 | 14.1 |
| 602.56 | 1.15 | 6.35 | 1.39 | -- | -- | -- | -- | 0.792 | -- | -- | -- | -- | -- |
| 545.17 | 1.09 | 6.36 | -- | 1.44 | -- | -- | -- | 0.615 | 6.87 | -- | -- | -- | -- |
| 497.92 | 1.04 | 6.37 | -- | -- | 2.1 | -- | -- | 0.699 | -- | 70 | 85 | 4.8 | 12.3 |
| 653.29 | 1.19 | 6.39 | -- | -- | -- | -- | -- | 0.639 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 406.74 | humidity | 70.0 | 90 | > th | dose dependent | rect. | 5 | 14 |
| 2 | 406.76 | humidity | 50.0 | 90 | > th | dose dependent | rect. | 5 | 14 |
| 5 | 408.98 | humidity | 70.0 | 90 | > th | dose dependent | rect. | 5 | 18 |
| 8 | 412.44 | humidity | 70.0 | 30 | > th | dose dependent | rect. | 5 | 21 |
| 10 | 412.86 | humidity | 80.0 | 90 | > th | dose independent | rect. | 5 | 13 |
| 14 | 413.52 | humidity | 70.0 | 90 | > th | dose dependent | rect. | 5 | 16 |
| 30 | 418.06 | humidity | 50.0 | 90 | > th | dose dependent | rect. | 5 | 16 |
| 52 | 421.12 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 6 | 23 |
| 53 | 421.12 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 6 | 23 |
| 54 | 421.32 | temperature | 20.0 | 270 | > th | dose independent | rect. | 5 | 1 |
| 61 | 422.30 | humidity | 80.0 | 270 | > th | dose dependent | rect. | 3 | 20 |
| 63 | 422.66 | humidity | 70.0 | 90 | > th | dose dependent | rect. | 5 | 6 |
| 67 | 422.90 | humidity | 80.0 | 90 | > th | dose independent | rect. | 5 | 18 |
| 69 | 422.96 | atmosphere | 1005.0 | 90 | > th | dose independent | rect. | 23 | 6 |
| 77 | 423.53 | humidity | 50.0 | 90 | > th | dose independent | rect. | 5 | 14 |
| 79 | 423.81 | radiation | 1.0 | 1440 | > th | dose independent | rect. | 11 | 2 |
| 84 | 424.42 | temperature | 15.0 | 270 | > th | dose dependent | rect. | 5 | 1 |
| 86 | 424.50 | radiation | 1.0 | 1440 | > th | dose independent | rect. | 9 | 4 |
| 104 | 425.92 | humidity | 70.0 | 90 | > th | dose dependent | rect. | 5 | 4 |
| 109 | 426.18 | humidity | 80.0 | 30 | > th | dose independent | rect. | 5 | 21 |
| 119 | 426.63 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 11 | 2 |
| 120 | 426.63 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 11 | 2 |
| 124 | 426.81 | humidity | 80.0 | 90 | > th | dose independent | rect. | 5 | 6 |
| 138 | 427.22 | radiation | 20.0 | 30 | < th | dose dependent | rect. | 5 | 21 |
| 149 | 427.67 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 13 | 1 |
| 150 | 427.67 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 13 | 1 |
| 165 | 428.12 | humidity | 80.0 | 90 | > th | dose independent | rect. | 5 | 4 |
| 170 | 428.55 | humidity | 70.0 | 270 | > th | dose dependent | rect. | 11 | 21 |
| 194 | 429.97 | temperature | 20.0 | 720 | > th | dose independent | rect. | 19 | 11 |
| 195 | 429.98 | radiation | 10.0 | 4320 | < th | dose dependent | rect. | 3 | 2 |
| 200 | 430.43 | atmosphere | 1000.0 | 90 | > th | dose dependent | rect. | 23 | 6 |
| 228 | 431.22 | atmosphere | 1015.0 | 90 | < th | dose dependent | rect. | 5 | 2 |
| 244 | 431.82 | atmosphere | 1005.0 | 270 | > th | dose independent | rect. | 23 | 3 |
| 269 | 432.66 | temperature | 15.0 | 90 | > th | dose dependent | rect. | 5 | 3 |
| 280 | 433.03 | radiation | 10.0 | 4320 | < th | dose dependent | rect. | 1 | 4 |
| 295 | 433.58 | humidity | 80.0 | 270 | > th | dose independent | rect. | 3 | 18 |
| 296 | 433.61 | radiation | 10.0 | 270 | < th | dose independent | rect. | 5 | 1 |
| 297 | 433.63 | temperature | 20.0 | 720 | > th | dose independent | rect. | 12 | 19 |
| 298 | 433.63 | radiation | 10.0 | 90 | < th | dose independent | rect. | 5 | 21 |
| 302 | 433.70 | radiation | 40.0 | 90 | < th | dose dependent | rect. | 5 | 4 |
| 303 | 433.71 | radiation | 10.0 | 90 | < th | dose dependent | rect. | 5 | 12 |
| 316 | 433.98 | humidity | 80.0 | 30 | > th | dose independent | rect. | 5 | 23 |
| 330 | 434.24 | radiation | 20.0 | 90 | < th | dose dependent | rect. | 5 | 18 |
| 346 | 434.49 | radiation | 20.0 | 90 | < th | dose dependent | rect. | 5 | 14 |
| 351 | 434.62 | wind | 7.0 | 4320 | > th | dose independent | rect. | 18 | 1 |
| 353 | 434.64 | temperature | 20.0 | 720 | > th | dose independent | rect. | 19 | 7 |
| 369 | 434.91 | radiation | 1.0 | 270 | > th | dose independent | rect. | 7 | 10 |
| 375 | 435.09 | humidity | 50.0 | 270 | > th | dose dependent | rect. | 17 | 14 |
| 382 | 435.19 | radiation | 20.0 | 90 | < th | dose independent | rect. | 5 | 4 |
| 386 | 435.32 | humidity | 50.0 | 90 | > th | dose independent | rect. | 5 | 18 |
| 406 | 435.68 | wind | 7.0 | 4320 | > th | dose dependent | rect. | 18 | 1 |
| 413 | 435.74 | temperature | 20.0 | 720 | > th | dose independent | sin | 13 | NA |
| 417 | 435.81 | wind | 5.0 | 90 | < th | dose independent | rect. | 19 | 10 |
| 420 | 435.83 | humidity | 90.0 | 90 | < th | dose dependent | rect. | 19 | 22 |
| 423 | 435.85 | radiation | 10.0 | 4320 | < th | dose independent | rect. | 3 | 2 |
| 442 | 436.13 | wind | 1.0 | 90 | > th | dose independent | rect. | 7 | 22 |
| 450 | 436.27 | temperature | 20.0 | 720 | < th | dose independent | rect. | 19 | 9 |
| 458 | 436.32 | humidity | 50.0 | 90 | > th | dose independent | rect. | 5 | 16 |
| 468 | 436.40 | radiation | 20.0 | 1440 | < th | dose dependent | rect. | 11 | 1 |
| 502 | 436.83 | atmosphere | 1010.0 | 270 | < th | dose independent | rect. | 5 | 1 |
| 503 | 436.83 | wind | 7.0 | 90 | < th | dose independent | rect. | 5 | 2 |
| 505 | 436.83 | temperature | 10.0 | 90 | > th | dose independent | rect. | 5 | 2 |
| 507 | 436.83 | temperature | 30.0 | 90 | < th | dose independent | rect. | 5 | 2 |
| 508 | 436.83 | humidity | 50.0 | 90 | > th | dose independent | rect. | 5 | 2 |
| 510 | 436.83 | atmosphere | 995.0 | 90 | > th | dose independent | rect. | 5 | 2 |
| 513 | 436.83 | temperature | 10.0 | 90 | > th | dose independent | rect. | 7 | 22 |
| 516 | 436.88 | radiation | 20.0 | 90 | < th | dose independent | rect. | 5 | 18 |
| 519 | 436.91 | humidity | 70.0 | 14400 | < th | dose dependent | rect. | 21 | 1 |
| 531 | 436.93 | humidity | 50.0 | 270 | > th | dose dependent | rect. | 3 | 13 |
| 532 | 436.95 | wind | 7.0 | 4320 | < th | dose independent | rect. | 18 | 1 |
| 542 | 437.04 | precipitation | 0.1 | 90 | < th | dose independent | rect. | 5 | 2 |
| 543 | 437.04 | precipitation | 0.1 | 90 | < th | dose dependent | rect. | 5 | 2 |
| 570 | 437.34 | wind | 9.0 | 1440 | < th | dose independent | rect. | 6 | 3 |
| 571 | 437.34 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 6 | 3 |
| 574 | 437.34 | humidity | 50.0 | 1440 | > th | dose independent | rect. | 6 | 3 |
| 576 | 437.34 | atmosphere | 995.0 | 1440 | > th | dose independent | rect. | 6 | 3 |
| 577 | 437.34 | atmosphere | 1015.0 | 1440 | < th | dose independent | rect. | 6 | 3 |
| 578 | 437.34 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 9 | 21 |
| 592 | 437.51 | temperature | 20.0 | 720 | < th | dose independent | sin | 13 | NA |
| 599 | 437.63 | temperature | 20.0 | 1440 | < th | dose independent | rect. | 22 | 5 |
| 606 | 437.66 | wind | 9.0 | 90 | < th | dose dependent | rect. | 5 | 2 |
| 610 | 437.73 | precipitation | 0.1 | 90 | < th | dose independent | rect. | 19 | 10 |
| 612 | 437.73 | precipitation | 0.1 | 90 | < th | dose dependent | rect. | 19 | 10 |
| 615 | 437.75 | temperature | 20.0 | 1440 | > th | dose independent | rect. | 22 | 5 |
| 618 | 437.80 | humidity | 80.0 | 1440 | < th | dose independent | rect. | 6 | 8 |
| 645 | 438.04 | temperature | 20.0 | 1440 | < th | dose independent | rect. | 23 | 2 |
| 647 | 438.08 | wind | 9.0 | 90 | < th | dose dependent | rect. | 5 | 4 |
| 654 | 438.14 | temperature | 20.0 | 1440 | > th | dose independent | rect. | 23 | 2 |
| 700 | 438.38 | humidity | 80.0 | 1440 | < th | dose independent | rect. | 2 | 13 |
| 720 | 438.58 | humidity | 90.0 | 720 | < th | dose dependent | rect. | 15 | 13 |
| 722 | 438.61 | humidity | 80.0 | 1440 | > th | dose independent | rect. | 2 | 13 |
| 751 | 438.76 | humidity | 90.0 | 720 | < th | dose dependent | rect. | 15 | 10 |
| 780 | 438.95 | humidity | 80.0 | 90 | < th | dose independent | rect. | 23 | 18 |
| 784 | 438.97 | humidity | 80.0 | 1440 | > th | dose independent | rect. | 6 | 9 |
| 810 | 439.15 | humidity | 60.0 | 1440 | > th | dose independent | rect. | 15 | 2 |
| 813 | 439.17 | wind | 3.0 | 90 | < th | dose independent | rect. | 5 | 4 |
| 829 | 439.26 | humidity | 80.0 | 90 | < th | dose independent | rect. | 1 | 16 |
| 834 | 439.28 | radiation | 40.0 | 14400 | < th | dose dependent | rect. | 3 | 2 |
| 836 | 439.32 | humidity | 70.0 | 90 | > th | dose dependent | sin | 23 | NA |
| 846 | 439.39 | radiation | 20.0 | 90 | < th | dose independent | rect. | 5 | 10 |
| 849 | 439.40 | wind | 7.0 | 4320 | > th | dose independent | rect. | 15 | 4 |
| 876 | 439.51 | humidity | 90.0 | 720 | < th | dose dependent | rect. | 15 | 20 |
| 880 | 439.54 | radiation | 1.0 | 1440 | > th | dose independent | rect. | 9 | 1 |
| 897 | 439.64 | temperature | 20.0 | 30 | > th | dose independent | rect. | 5 | 21 |
| 910 | 439.78 | humidity | 60.0 | 1440 | < th | dose independent | rect. | 15 | 2 |
| 936 | 439.92 | wind | 9.0 | 90 | < th | dose independent | rect. | 8 | 21 |
| 937 | 439.93 | wind | 5.0 | 90 | < th | dose independent | rect. | 23 | 6 |
| 973 | 440.08 | atmosphere | 1015.0 | 90 | < th | dose dependent | rect. | 5 | 4 |
| 976 | 440.10 | humidity | 60.0 | 1440 | < th | dose dependent | rect. | 15 | 1 |
| 984 | 440.16 | radiation | 1.0 | 270 | > th | dose independent | rect. | 7 | 22 |