Os04g0645700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Non-protein coding transcript, uncharacterized transcript.
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Os04g0645700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Non-protein coding transcript, uncharacterized transcript.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = rect.)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 400.02 | 0.94 | 7.52 | -1.18 | 2.65 | -1.2 | -1.73 | 2.09 | -0.239 | 23.1 | 19.96 | 1448 | 22 | 5.93 |
| 421.56 | 0.956 | 7.47 | -0.53 | 2.59 | -1.31 | -1.59 | -- | -0.209 | 23.1 | 20 | 1434 | 22.5 | 5.62 |
| 410.94 | 0.944 | 7.52 | -1.11 | 2.63 | -1.21 | -- | 2.26 | -0.24 | 23 | 19.9 | 1384 | 21.9 | 5.98 |
| 422.64 | 0.957 | 7.46 | -0.699 | 2.37 | -1.69 | -- | -- | -0.269 | 23 | 19.93 | 2299 | 21.8 | 6.12 |
| 643.38 | 1.18 | 7.21 | -0.268 | -- | -2.81 | -- | 2.66 | 0.392 | -- | 44.08 | 3807 | 22.7 | 6.96 |
| 506.79 | 1.06 | 7.33 | 0.166 | 2.67 | -- | -1.78 | -- | 0.354 | 23.3 | -- | -- | -- | -- |
| 520.14 | 1.07 | 7.32 | 0.241 | 2.69 | -- | -- | -- | 0.362 | 23.2 | -- | -- | -- | -- |
| 504.43 | 1.05 | 7.24 | -0.0618 | -- | -3.31 | -- | -- | 0.358 | -- | 30.4 | 4939 | 1.55 | 8.33 |
| 430.41 | 0.966 | 7.44 | -- | 2.47 | -1.61 | -- | -- | -0.101 | 23.1 | 20.1 | 2292 | 21.8 | 6.05 |
| 970.79 | 1.46 | 7.26 | 0.305 | -- | -- | -- | -- | 0.385 | -- | -- | -- | -- | -- |
| 521.67 | 1.07 | 7.33 | -- | 2.69 | -- | -- | -- | 0.336 | 23.2 | -- | -- | -- | -- |
| 497.09 | 1.04 | 7.25 | -- | -- | -3.12 | -- | -- | 0.384 | -- | 30.37 | 4916 | 2.57 | 7.2 |
| 973.24 | 1.46 | 7.27 | -- | -- | -- | -- | -- | 0.352 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 400.37 | temperature | 20 | 1440 | < th | dose independent | rect. | 22 | 6 |
| 4 | 401.06 | temperature | 20 | 1440 | > th | dose independent | rect. | 3 | 1 |
| 6 | 401.26 | temperature | 20 | 1440 | > th | dose independent | rect. | 22 | 6 |
| 13 | 401.91 | temperature | 20 | 1440 | > th | dose independent | rect. | 1 | 3 |
| 15 | 402.02 | temperature | 20 | 1440 | < th | dose independent | rect. | 3 | 1 |
| 43 | 405.32 | humidity | 70 | 14400 | > th | dose dependent | rect. | 23 | 8 |
| 45 | 405.34 | humidity | 50 | 14400 | > th | dose dependent | rect. | 23 | 8 |
| 53 | 406.00 | wind | 9 | 43200 | > th | dose independent | rect. | 10 | 4 |
| 56 | 406.15 | humidity | 70 | 14400 | > th | dose dependent | rect. | 2 | 5 |
| 73 | 407.15 | temperature | 20 | 1440 | > th | dose independent | rect. | 22 | 9 |
| 93 | 408.38 | temperature | 15 | 720 | > th | dose dependent | rect. | 23 | 5 |
| 127 | 409.90 | humidity | 50 | 14400 | > th | dose dependent | rect. | 24 | 1 |
| 171 | 411.84 | wind | 1 | 14400 | < th | dose independent | rect. | 24 | 2 |
| 204 | 412.82 | wind | 1 | 14400 | < th | dose dependent | rect. | 24 | 2 |
| 208 | 413.25 | wind | 9 | 43200 | < th | dose independent | rect. | 10 | 4 |
| 228 | 413.98 | atmosphere | 1015 | 43200 | < th | dose independent | rect. | 19 | 1 |
| 230 | 414.01 | humidity | 90 | 4320 | > th | dose dependent | rect. | 6 | 1 |
| 239 | 414.56 | atmosphere | 1015 | 43200 | > th | dose independent | rect. | 19 | 2 |
| 243 | 414.66 | wind | 9 | 43200 | > th | dose independent | rect. | 9 | 7 |
| 251 | 415.04 | wind | 1 | 14400 | > th | dose independent | rect. | 24 | 2 |
| 257 | 415.25 | temperature | 10 | 720 | > th | dose dependent | rect. | 23 | 10 |
| 258 | 415.38 | temperature | 30 | 720 | < th | dose dependent | rect. | 23 | 9 |
| 273 | 416.03 | temperature | 20 | 1440 | > th | dose independent | rect. | 5 | 2 |
| 298 | 416.69 | temperature | 20 | 1440 | < th | dose independent | rect. | 5 | 1 |
| 317 | 417.00 | temperature | 20 | 720 | > th | dose independent | sin | 11 | NA |
| 332 | 417.48 | temperature | 30 | 720 | < th | dose dependent | rect. | 1 | 7 |
| 346 | 417.76 | temperature | 20 | 1440 | < th | dose independent | sin | 10 | NA |
| 363 | 418.34 | atmosphere | 1015 | 43200 | < th | dose independent | rect. | 18 | 3 |
| 372 | 418.42 | atmosphere | 995 | 43200 | > th | dose independent | rect. | 21 | 16 |
| 383 | 418.61 | atmosphere | 995 | 43200 | < th | dose independent | rect. | 18 | 19 |
| 389 | 418.73 | wind | 1 | 14400 | < th | dose dependent | rect. | 22 | 9 |
| 390 | 418.75 | temperature | 30 | 270 | < th | dose dependent | rect. | 20 | 16 |
| 406 | 419.02 | atmosphere | 995 | 43200 | < th | dose independent | sin | 7 | NA |
| 409 | 419.04 | wind | 7 | 43200 | > th | dose dependent | rect. | 16 | 1 |
| 418 | 419.16 | atmosphere | 995 | 43200 | < th | dose independent | rect. | 21 | 16 |
| 422 | 419.16 | wind | 1 | 14400 | < th | dose dependent | rect. | 19 | 12 |
| 423 | 419.18 | atmosphere | 1015 | 43200 | > th | dose independent | rect. | 17 | 5 |
| 439 | 419.42 | radiation | 1 | 14400 | < th | dose independent | rect. | 15 | 1 |
| 441 | 419.44 | radiation | 1 | 14400 | > th | dose independent | rect. | 15 | 1 |
| 443 | 419.48 | temperature | 15 | 1440 | > th | dose dependent | rect. | 2 | 1 |
| 447 | 419.60 | temperature | 30 | 720 | < th | dose dependent | rect. | 3 | 5 |
| 449 | 419.61 | atmosphere | 995 | 43200 | > th | dose independent | sin | 7 | NA |
| 457 | 419.76 | atmosphere | 995 | 43200 | < th | dose dependent | rect. | 11 | 19 |
| 459 | 419.77 | wind | 9 | 43200 | < th | dose independent | rect. | 9 | 7 |
| 547 | 420.60 | temperature | 30 | 1440 | < th | dose dependent | rect. | 2 | 2 |
| 568 | 420.75 | atmosphere | 1015 | 43200 | > th | dose dependent | rect. | 12 | 1 |
| 588 | 420.91 | wind | 3 | 43200 | < th | dose dependent | rect. | 22 | 1 |
| 626 | 421.22 | atmosphere | 1015 | 43200 | > th | dose dependent | rect. | 11 | 3 |
| 640 | 421.35 | atmosphere | 1015 | 43200 | > th | dose dependent | rect. | 11 | 19 |
| 643 | 421.38 | atmosphere | 1015 | 43200 | > th | dose dependent | rect. | 21 | 1 |
| 650 | 421.46 | temperature | 30 | 1440 | < th | dose dependent | rect. | 24 | 4 |
| 651 | 421.47 | atmosphere | 995 | 43200 | < th | dose dependent | sin | 10 | NA |
| 672 | 421.69 | atmosphere | 1015 | 43200 | > th | dose dependent | rect. | 9 | 15 |
| 678 | 421.73 | temperature | 30 | 720 | < th | dose dependent | sin | 8 | NA |
| 712 | 421.99 | atmosphere | 1015 | 43200 | > th | dose dependent | sin | 21 | NA |
| 733 | 422.10 | atmosphere | 1015 | 43200 | > th | dose dependent | rect. | 10 | 6 |
| 735 | 422.12 | wind | 9 | 43200 | > th | dose dependent | rect. | 10 | 7 |
| 772 | 422.29 | atmosphere | 1015 | 43200 | < th | dose independent | sin | 16 | NA |
| 790 | 422.37 | atmosphere | 995 | 43200 | > th | dose independent | rect. | 5 | 3 |
| 792 | 422.37 | atmosphere | 1015 | 43200 | > th | dose dependent | rect. | 9 | 10 |
| 814 | 422.46 | atmosphere | 1015 | 43200 | > th | dose dependent | sin | 14 | NA |
| 822 | 422.49 | atmosphere | 1015 | 43200 | > th | dose independent | sin | 16 | NA |
| 859 | 422.63 | atmosphere | 1015 | 43200 | < th | dose independent | rect. | 23 | 2 |
| 898 | 422.78 | atmosphere | 995 | 43200 | > th | dose independent | rect. | 3 | 6 |
| 948 | 422.97 | atmosphere | 995 | 43200 | > th | dose independent | rect. | 2 | 8 |
| 1000 | 423.13 | atmosphere | 1015 | 43200 | > th | dose dependent | rect. | 20 | 4 |