Os04g0645200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : VQ domain containing protein.
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Os04g0645200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : VQ domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = atmosphere,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 276.32 | 0.781 | 5.1 | 0.878 | 0.0883 | -1.08 | -1.76 | -4.02 | 0.327 | 9.86 | 997.8 | 8167 | -- | -- |
| 283.65 | 0.784 | 5.04 | 1.05 | 0.142 | -1.43 | -1.68 | -- | 0.367 | 9.56 | 997.5 | 9919 | -- | -- |
| 285.45 | 0.787 | 5.12 | 0.939 | 0.215 | -1.16 | -- | -3.91 | 0.307 | 5.46 | 997.9 | 8242 | -- | -- |
| 289.96 | 0.793 | 5.09 | 1.03 | 0.267 | -1.3 | -- | -- | 0.305 | 5.77 | 996.7 | 10921 | -- | -- |
| 288.77 | 0.791 | 5.1 | 0.809 | -- | -1.08 | -- | -4.13 | 0.324 | -- | 997.8 | 8248 | -- | -- |
| 329.23 | 0.851 | 5.05 | 0.817 | 0.0667 | -- | -1.76 | -- | 0.426 | 10.1 | -- | -- | -- | -- |
| 337.19 | 0.86 | 5.05 | 0.737 | 0.297 | -- | -- | -- | 0.415 | 5.33 | -- | -- | -- | -- |
| 294.14 | 0.799 | 5.08 | 1.01 | -- | -1.33 | -- | -- | 0.318 | -- | 996.7 | 10916 | -- | -- |
| 314.71 | 0.826 | 5.08 | -- | 0.302 | -1.34 | -- | -- | 0.229 | 5.4 | 996.8 | 9607 | -- | -- |
| 341.79 | 0.864 | 5.05 | 0.747 | -- | -- | -- | -- | 0.422 | -- | -- | -- | -- | -- |
| 351.49 | 0.877 | 5.07 | -- | 0.31 | -- | -- | -- | 0.333 | 5.24 | -- | -- | -- | -- |
| 319.23 | 0.832 | 5.1 | -- | -- | -1.33 | -- | -- | 0.223 | -- | 996.7 | 9616 | -- | -- |
| 356.51 | 0.881 | 5.07 | -- | -- | -- | -- | -- | 0.339 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 261.43 | atmosphere | 1005.0 | 14400 | > th | dose independent | rect. | 23 | 1 |
| 2 | 265.96 | atmosphere | 1005.0 | 14400 | < th | dose independent | rect. | 23 | 1 |
| 12 | 270.16 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 17 | 1 |
| 14 | 270.46 | atmosphere | 1005.0 | 14400 | > th | dose independent | rect. | 23 | 5 |
| 22 | 270.96 | atmosphere | 1005.0 | 14400 | < th | dose independent | rect. | 3 | 1 |
| 24 | 271.02 | atmosphere | 1005.0 | 14400 | > th | dose independent | rect. | 3 | 1 |
| 69 | 273.23 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 17 | 1 |
| 82 | 273.71 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 17 | 1 |
| 83 | 273.71 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 17 | 1 |
| 88 | 274.23 | atmosphere | 1005.0 | 4320 | > th | dose independent | rect. | 20 | 2 |
| 92 | 274.46 | wind | 7.0 | 4320 | > th | dose dependent | rect. | 20 | 8 |
| 101 | 274.76 | wind | 7.0 | 4320 | > th | dose independent | rect. | 20 | 7 |
| 125 | 275.91 | wind | 9.0 | 4320 | < th | dose independent | rect. | 19 | 2 |
| 127 | 275.96 | wind | 7.0 | 4320 | > th | dose dependent | rect. | 20 | 2 |
| 129 | 276.02 | wind | 7.0 | 4320 | > th | dose independent | rect. | 20 | 2 |
| 132 | 276.04 | wind | 7.0 | 4320 | > th | dose independent | rect. | 20 | 5 |
| 135 | 276.05 | wind | 7.0 | 4320 | < th | dose independent | rect. | 20 | 7 |
| 153 | 276.97 | atmosphere | 1005.0 | 4320 | < th | dose independent | rect. | 20 | 3 |
| 161 | 277.21 | wind | 7.0 | 4320 | < th | dose independent | rect. | 20 | 5 |
| 226 | 278.50 | atmosphere | 1005.0 | 14400 | > th | dose independent | sin | 10 | NA |
| 242 | 278.75 | humidity | 80.0 | 14400 | > th | dose dependent | rect. | 13 | 1 |
| 252 | 278.95 | atmosphere | 1005.0 | 14400 | < th | dose independent | sin | 10 | NA |
| 283 | 279.65 | wind | 7.0 | 4320 | > th | dose dependent | rect. | 17 | 11 |
| 293 | 279.82 | atmosphere | 1005.0 | 4320 | < th | dose dependent | rect. | 9 | 1 |
| 316 | 280.16 | atmosphere | 995.0 | 14400 | < th | dose dependent | rect. | 14 | 1 |
| 334 | 280.44 | atmosphere | 995.0 | 14400 | > th | dose independent | rect. | 18 | 3 |
| 336 | 280.45 | wind | 9.0 | 4320 | < th | dose independent | rect. | 17 | 11 |
| 340 | 280.48 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 20 | 3 |
| 346 | 280.63 | atmosphere | 995.0 | 14400 | > th | dose independent | rect. | 17 | 1 |
| 356 | 280.73 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 21 | 1 |
| 368 | 280.86 | wind | 9.0 | 4320 | > th | dose dependent | sin | 13 | NA |
| 382 | 281.02 | atmosphere | 995.0 | 14400 | > th | dose independent | rect. | 15 | 7 |
| 390 | 281.05 | atmosphere | 995.0 | 14400 | < th | dose independent | rect. | 15 | 7 |
| 416 | 281.22 | atmosphere | 995.0 | 14400 | < th | dose dependent | rect. | 18 | 1 |
| 426 | 281.26 | atmosphere | 1000.0 | 4320 | < th | dose independent | rect. | 11 | 1 |
| 429 | 281.28 | atmosphere | 995.0 | 14400 | > th | dose independent | rect. | 13 | 9 |
| 430 | 281.31 | humidity | 80.0 | 14400 | > th | dose independent | rect. | 15 | 1 |
| 434 | 281.32 | atmosphere | 1000.0 | 4320 | > th | dose independent | rect. | 11 | 1 |
| 436 | 281.32 | atmosphere | 995.0 | 14400 | > th | dose independent | rect. | 11 | 11 |
| 438 | 281.33 | atmosphere | 1005.0 | 4320 | < th | dose dependent | rect. | 4 | 6 |
| 448 | 281.35 | atmosphere | 995.0 | 14400 | > th | dose independent | rect. | 8 | 14 |
| 449 | 281.35 | atmosphere | 995.0 | 14400 | < th | dose independent | rect. | 5 | 14 |
| 463 | 281.39 | atmosphere | 995.0 | 14400 | > th | dose independent | rect. | 6 | 16 |
| 475 | 281.47 | atmosphere | 995.0 | 14400 | < th | dose independent | sin | 21 | NA |
| 477 | 281.47 | atmosphere | 995.0 | 14400 | < th | dose dependent | rect. | 15 | 7 |
| 492 | 281.54 | atmosphere | 995.0 | 14400 | > th | dose independent | sin | 21 | NA |
| 499 | 281.55 | atmosphere | 1005.0 | 4320 | < th | dose dependent | rect. | 4 | 1 |
| 552 | 281.69 | atmosphere | 995.0 | 14400 | < th | dose dependent | rect. | 5 | 14 |
| 642 | 281.92 | wind | 9.0 | 4320 | < th | dose independent | rect. | 17 | 17 |
| 643 | 281.92 | atmosphere | 995.0 | 14400 | < th | dose dependent | sin | 22 | NA |
| 789 | 282.32 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 20 | 5 |
| 802 | 282.37 | atmosphere | 995.0 | 14400 | < th | dose independent | rect. | 14 | 1 |
| 865 | 282.45 | wind | 3.0 | 14400 | < th | dose independent | rect. | 1 | 1 |
| 920 | 282.57 | atmosphere | 1005.0 | 4320 | < th | dose dependent | sin | 7 | NA |