Os04g0644700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Coatomer epsilon subunit family protein.
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Os04g0644700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Coatomer epsilon subunit family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = atmosphere,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 347.3 | 0.876 | 4.39 | 2.25 | 0.108 | 1.1 | -1.51 | 3.62 | 1.1 | 19.1 | 1010 | 22315 | -- | -- |
| 367.34 | 0.893 | 4.45 | 1.5 | 0.0213 | 1.28 | -1.72 | -- | 1.18 | 18.5 | 1004 | 30295 | -- | -- |
| 352.25 | 0.874 | 4.4 | 2.32 | 0.163 | 0.998 | -- | 3.43 | 1.09 | 21.9 | 1010 | 22080 | -- | -- |
| 373.28 | 0.9 | 4.45 | 1.5 | 0.022 | 1.11 | -- | -- | 1.17 | 18.4 | 1004 | 30678 | -- | -- |
| 353.77 | 0.876 | 4.4 | 2.35 | -- | 1.05 | -- | 3.6 | 1.09 | -- | 1010 | 22314 | -- | -- |
| 397.79 | 0.935 | 4.49 | 1.7 | 0.0796 | -- | -1.62 | -- | 1 | 18.8 | -- | -- | -- | -- |
| 402.22 | 0.939 | 4.49 | 1.72 | 0.202 | -- | -- | -- | 0.993 | 23.5 | -- | -- | -- | -- |
| 373.23 | 0.9 | 4.46 | 1.47 | -- | 1.09 | -- | -- | 1.14 | -- | 1004 | 30689 | -- | -- |
| 387.52 | 0.917 | 4.63 | -- | 0.0723 | 1.55 | -- | -- | 0.373 | 18.6 | 1012 | 47520 | -- | -- |
| 404.78 | 0.94 | 4.49 | 1.73 | -- | -- | -- | -- | 0.995 | -- | -- | -- | -- | -- |
| 480.5 | 1.03 | 4.54 | -- | 0.223 | -- | -- | -- | 0.801 | 0.019 | -- | -- | -- | -- |
| 387.78 | 0.917 | 4.63 | -- | -- | 1.54 | -- | -- | 0.372 | -- | 1012 | 47520 | -- | -- |
| 483.62 | 1.03 | 4.53 | -- | -- | -- | -- | -- | 0.804 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 349.01 | atmosphere | 1005.0 | 14400 | > th | dose dependent | rect. | 22 | 1 |
| 2 | 349.09 | atmosphere | 1005.0 | 14400 | > th | dose dependent | rect. | 22 | 3 |
| 33 | 349.75 | atmosphere | 1005.0 | 14400 | > th | dose dependent | rect. | 20 | 15 |
| 57 | 349.84 | atmosphere | 1005.0 | 14400 | > th | dose dependent | rect. | 7 | 4 |
| 67 | 349.87 | atmosphere | 1005.0 | 14400 | > th | dose dependent | sin | 10 | NA |
| 68 | 349.87 | atmosphere | 1005.0 | 14400 | > th | dose dependent | rect. | 10 | 1 |
| 121 | 350.02 | atmosphere | 1000.0 | 14400 | > th | dose dependent | rect. | 16 | 1 |
| 243 | 350.35 | atmosphere | 1005.0 | 14400 | > th | dose dependent | rect. | 4 | 23 |
| 245 | 350.36 | atmosphere | 1005.0 | 14400 | > th | dose dependent | no | NA | NA |
| 282 | 350.40 | atmosphere | 1005.0 | 14400 | > th | dose dependent | rect. | 9 | 23 |
| 393 | 350.64 | atmosphere | 1005.0 | 14400 | > th | dose dependent | rect. | 4 | 1 |
| 493 | 350.88 | atmosphere | 1000.0 | 14400 | > th | dose dependent | rect. | 9 | 11 |
| 577 | 351.05 | atmosphere | 1010.0 | 14400 | < th | dose independent | rect. | 9 | 1 |
| 871 | 351.61 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 17 | 1 |
| 872 | 351.61 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 17 | 1 |
| 949 | 351.84 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 17 | 1 |