Os04g0643500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : 2OG-Fe(II) oxygenase domain containing protein.
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Os04g0643500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : 2OG-Fe(II) oxygenase domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = wind,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 414.11 | 0.956 | 3.19 | 0.0133 | 0.076 | 7.89 | 0.763 | 19.2 | -0.214 | 4.71 | 9.087 | 29 | -- | -- |
| 445.91 | 0.991 | 3.14 | -0.309 | 9.85e-05 | -0.589 | -1.05 | -- | -0.273 | 17.4 | 9.117 | 18 | -- | -- |
| 415.58 | 0.949 | 3.19 | 0.0112 | 0.0886 | 7.97 | -- | 19 | -0.215 | 4.26 | 9.099 | 28 | -- | -- |
| 437.76 | 0.974 | 3.1 | -0.49 | 0.0261 | 1.26 | -- | -- | -0.263 | 17.7 | 9.254 | 11 | -- | -- |
| 415.96 | 0.95 | 3.19 | 0.0136 | -- | 7.79 | -- | 18.6 | -0.214 | -- | 9.076 | 28 | -- | -- |
| 447.22 | 0.991 | 3.14 | -0.272 | 0.00776 | -- | 1.03 | -- | -0.263 | 5.65 | -- | -- | -- | -- |
| 449.76 | 0.993 | 3.14 | -0.266 | 0.0315 | -- | -- | -- | -0.267 | 9.84 | -- | -- | -- | -- |
| 429.67 | 0.965 | 3.16 | -0.17 | -- | 2.72 | -- | -- | -0.224 | -- | 9.36 | 23 | -- | -- |
| 433.26 | 0.969 | 3.12 | -- | 0.093 | 1.66 | -- | -- | -0.193 | 5.54 | 9.3 | 10 | -- | -- |
| 449.82 | 0.991 | 3.14 | -0.267 | -- | -- | -- | -- | -0.267 | -- | -- | -- | -- | -- |
| 451.63 | 0.994 | 3.13 | -- | 0.0327 | -- | -- | -- | -0.237 | 10.5 | -- | -- | -- | -- |
| 428.32 | 0.964 | 3.12 | -- | -- | 2.93 | -- | -- | -0.194 | -- | 9.392 | 20 | -- | -- |
| 451.69 | 0.992 | 3.13 | -- | -- | -- | -- | -- | -0.237 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 408.09 | wind | 9.0 | 30 | > th | dose independent | rect. | 1 | 11 |
| 9 | 409.13 | wind | 9.0 | 30 | > th | dose independent | rect. | 10 | 2 |
| 27 | 409.41 | wind | 9.0 | 30 | > th | dose dependent | rect. | 1 | 11 |
| 35 | 410.06 | wind | 9.0 | 30 | > th | dose independent | sin | 6 | NA |
| 36 | 410.28 | wind | 9.0 | 30 | > th | dose dependent | rect. | 10 | 2 |
| 54 | 410.38 | wind | 9.0 | 30 | > th | dose dependent | sin | 7 | NA |
| 55 | 410.42 | wind | 9.0 | 30 | < th | dose independent | sin | 6 | NA |
| 59 | 410.57 | wind | 9.0 | 30 | > th | dose independent | rect. | 17 | 19 |
| 93 | 413.22 | radiation | 10.0 | 90 | < th | dose dependent | rect. | 13 | 2 |
| 103 | 414.02 | atmosphere | 1010.0 | 270 | > th | dose independent | rect. | 12 | 1 |
| 140 | 414.55 | radiation | 10.0 | 270 | < th | dose independent | rect. | 12 | 1 |
| 150 | 415.13 | wind | 9.0 | 30 | > th | dose independent | rect. | 1 | 17 |
| 156 | 415.37 | precipitation | 0.1 | 270 | > th | dose independent | rect. | 13 | 1 |
| 159 | 415.37 | precipitation | 0.1 | 270 | > th | dose dependent | rect. | 13 | 1 |
| 185 | 415.93 | wind | 9.0 | 30 | > th | dose independent | rect. | 10 | 8 |
| 195 | 415.97 | radiation | 10.0 | 90 | < th | dose independent | rect. | 12 | 3 |
| 277 | 417.21 | wind | 9.0 | 30 | > th | dose independent | no | NA | NA |
| 278 | 417.21 | wind | 9.0 | 30 | > th | dose independent | rect. | 10 | 16 |
| 528 | 420.61 | wind | 9.0 | 10 | > th | dose dependent | rect. | 10 | 8 |
| 544 | 420.69 | wind | 9.0 | 10 | > th | dose dependent | rect. | 19 | 23 |
| 555 | 421.06 | wind | 9.0 | 30 | < th | dose independent | no | NA | NA |
| 600 | 421.19 | wind | 9.0 | 10 | > th | dose dependent | no | NA | NA |
| 879 | 422.48 | temperature | 25.0 | 90 | < th | dose dependent | rect. | 13 | 2 |
| 986 | 423.20 | wind | 5.0 | 90 | > th | dose independent | rect. | 20 | 15 |