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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os04g0643200

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Amidase family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 10 (0.0449) R2 : 0.578
β1 : 0.998 (0.165) R2dD : 0.035 R2D : 0.00452
β2 : 2.5 (0.119) R2dC : 0.437 R2C : 0.332
β3 : 1.7 (0.18) R2dE : 0.0905 R2E : -0.0215
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.807 (0.097) R2dN8 : 0.0892 R2N8 : 0.114
σ : 0.838
deviance : 323.38
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_____
C
peak time of C : 19.3
E
wheather : temperature
threshold : 20.7
memory length : 55
response mode : < th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 1.23
open length of G : 11.6

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
318.64 0.839 10 1.04 2.51 1.67 -1.4 -0.841 -0.792 19.3 20.6 62 1.15 11.5
320.53 0.834 10 0.972 2.51 1.72 -1.03 -- -0.808 19.3 20.6 61 1.15 10.9
322.99 0.837 10 1.02 2.5 1.68 -- -0.352 -0.806 19.3 20.7 55 1.22 11.4
323.38 0.838 10 0.998 2.5 1.7 -- -- -0.807 19.3 20.7 55 1.23 11.6
635.53 1.18 9.99 0.872 -- 0.869 -- -0.342 -0.926 -- 20.7 55 1.22 11.4
384.42 0.919 10.1 0.771 2.24 -- -0.653 -- -0.972 19.5 -- -- -- --
385.59 0.92 10.1 0.786 2.24 -- -- -- -0.973 19.5 -- -- -- --
635.92 1.18 9.99 0.839 -- 0.888 -- -- -0.932 -- 20.7 55 1.23 11.6
348.62 0.874 10.1 -- 2.45 1.53 -- -- -0.942 19.3 20.7 55 1.23 11.6
654.85 1.2 10 0.752 -- -- -- -- -1.01 -- -- -- -- --
401.88 0.938 10.1 -- 2.24 -- -- -- -1.06 19.5 -- -- -- --
654.31 1.2 10 -- -- 0.798 -- -- -1.03 -- 20.7 55 1.23 11.6
669.78 1.21 10 -- -- -- -- -- -1.09 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 313.65 precipitation 0.1 14400 > th dose independent rect. 5 5
2 314.02 precipitation 0.1 14400 > th dose dependent rect. 5 5
3 314.19 precipitation 0.1 14400 < th dose independent rect. 5 5
4 314.19 precipitation 0.1 14400 < th dose dependent rect. 5 5
5 316.34 humidity 90.0 14400 > th dose dependent rect. 9 1
6 316.72 precipitation 0.1 14400 > th dose independent rect. 7 3
7 316.72 precipitation 0.1 14400 > th dose dependent rect. 7 3
12 317.62 precipitation 0.1 14400 > th dose independent rect. 4 9
20 318.15 precipitation 0.1 14400 < th dose independent rect. 4 9
21 318.15 precipitation 0.1 14400 > th dose dependent rect. 4 9
22 318.15 precipitation 0.1 14400 < th dose dependent rect. 4 9
29 318.45 precipitation 0.1 14400 < th dose independent rect. 7 3
30 318.45 precipitation 0.1 14400 < th dose dependent rect. 7 3
32 318.50 precipitation 0.1 14400 < th dose independent rect. 6 10
33 318.50 precipitation 0.1 14400 < th dose dependent rect. 6 10
47 318.97 temperature 25.0 14400 < th dose dependent rect. 9 1
66 320.23 humidity 90.0 14400 > th dose dependent rect. 7 7
72 320.51 temperature 20.0 14400 < th dose independent rect. 20 1
73 320.56 humidity 90.0 14400 > th dose dependent rect. 8 9
82 320.63 precipitation 0.1 14400 > th dose independent rect. 9 1
84 320.63 precipitation 0.1 14400 > th dose dependent rect. 9 1
105 321.64 precipitation 0.1 14400 < th dose independent rect. 9 1
106 321.64 precipitation 0.1 14400 < th dose dependent rect. 9 1
109 321.77 humidity 90.0 14400 > th dose independent rect. 9 1
130 322.98 temperature 25.0 14400 < th dose independent rect. 10 2
131 323.00 wind 3.0 43200 < th dose independent rect. 6 1
132 323.02 wind 3.0 43200 > th dose independent rect. 6 2
146 323.69 temperature 25.0 14400 > th dose independent rect. 10 2
169 324.68 wind 1.0 43200 > th dose dependent rect. 5 2
174 324.74 wind 9.0 43200 < th dose dependent rect. 5 2
182 324.94 temperature 20.0 14400 > th dose independent rect. 20 1
186 324.98 temperature 20.0 90 < th dose independent rect. 1 11
197 325.18 temperature 20.0 14400 > th dose independent rect. 18 3
198 325.20 humidity 90.0 14400 > th dose independent rect. 7 7
218 325.68 precipitation 0.1 14400 > th dose dependent rect. 5 11
237 325.93 humidity 90.0 14400 > th dose independent rect. 7 4
247 326.04 temperature 25.0 10 < th dose dependent rect. 24 12
254 326.13 temperature 20.0 270 > th dose independent rect. 2 9
277 326.43 temperature 10.0 14400 > th dose dependent rect. 9 1
320 326.98 wind 9.0 14400 < th dose independent rect. 5 6
363 327.44 wind 9.0 14400 > th dose independent rect. 6 5
379 327.61 temperature 25.0 90 < th dose dependent rect. 1 10
380 327.62 humidity 80.0 14400 > th dose independent rect. 13 1
387 327.67 humidity 90.0 14400 < th dose independent rect. 7 7
389 327.68 temperature 30.0 14400 < th dose dependent rect. 13 1
391 327.72 temperature 25.0 14400 > th dose independent rect. 13 1
394 327.76 wind 3.0 43200 > th dose independent rect. 1 7
415 327.95 humidity 90.0 14400 > th dose dependent rect. 16 1
431 328.05 humidity 90.0 14400 > th dose dependent rect. 12 5
454 328.25 wind 3.0 43200 < th dose independent rect. 1 7
474 328.35 humidity 90.0 14400 > th dose dependent sin 22 NA
475 328.36 humidity 80.0 14400 < th dose independent rect. 13 1
493 328.46 wind 3.0 14400 > th dose dependent rect. 4 5
545 328.84 temperature 25.0 14400 < th dose independent rect. 15 1
554 328.94 temperature 20.0 90 > th dose independent sin 4 NA
572 329.07 wind 3.0 14400 > th dose dependent rect. 3 8
579 329.12 temperature 25.0 14400 < th dose independent rect. 13 1
597 329.23 humidity 80.0 14400 < th dose independent rect. 10 1
599 329.24 humidity 90.0 14400 > th dose independent rect. 7 15
609 329.32 humidity 90.0 14400 > th dose independent rect. 20 2
645 329.54 temperature 20.0 90 < th dose independent sin 4 NA
702 329.83 humidity 90.0 14400 > th dose dependent rect. 3 19
725 330.02 temperature 25.0 14400 < th dose dependent rect. 17 1
741 330.10 temperature 25.0 10 < th dose dependent sin 5 NA
742 330.11 precipitation 0.1 14400 < th dose independent rect. 14 2
744 330.11 precipitation 0.1 14400 < th dose dependent rect. 14 2
782 330.30 wind 9.0 14400 < th dose independent rect. 9 2
804 330.42 temperature 25.0 14400 < th dose dependent sin 23 NA
909 330.87 wind 9.0 14400 < th dose independent rect. 21 16
924 330.94 humidity 90.0 14400 > th dose dependent rect. 20 2
962 331.10 wind 9.0 43200 < th dose independent rect. 2 12
971 331.14 precipitation 0.1 14400 > th dose independent rect. 14 2
972 331.14 precipitation 0.1 14400 > th dose dependent rect. 14 2
986 331.19 humidity 80.0 43200 < th dose independent rect. 5 2