Os04g0641000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to DNA-directed RNA polymerase, subunit B (RNA polymerase IV second- largest subunit).
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Os04g0641000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to DNA-directed RNA polymerase, subunit B (RNA polymerase IV second- largest subunit).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 51.31 | 0.337 | 10.7 | 1.51 | 1.75 | 0.394 | 0.478 | 0.192 | 0.197 | 18.1 | 17.76 | 20 | -- | -- |
| 51.51 | 0.334 | 10.7 | 1.52 | 1.75 | 0.388 | 0.462 | -- | 0.196 | 18.1 | 17.76 | 22 | -- | -- |
| 51.85 | 0.335 | 10.7 | 1.51 | 1.75 | 0.395 | -- | 0.175 | 0.198 | 18.1 | 17.76 | 22 | -- | -- |
| 52.01 | 0.336 | 10.7 | 1.52 | 1.75 | 0.392 | -- | -- | 0.197 | 18.1 | 17.76 | 23 | -- | -- |
| 70.67 | 0.392 | 10.7 | 1.56 | -- | 1.9 | -- | -1.25 | 0.144 | -- | 0.5911 | 655 | -- | -- |
| 56.68 | 0.353 | 10.7 | 1.54 | 1.79 | -- | 0.473 | -- | 0.204 | 17.3 | -- | -- | -- | -- |
| 57.24 | 0.354 | 10.7 | 1.54 | 1.8 | -- | -- | -- | 0.206 | 17.3 | -- | -- | -- | -- |
| 63.37 | 0.371 | 10.7 | 1.38 | -- | 1.98 | -- | -- | 0.105 | -- | 0.4101 | 651 | -- | -- |
| 111.84 | 0.493 | 10.8 | -- | 1.76 | 0.424 | -- | -- | 0.0522 | 18 | 20.09 | 22 | -- | -- |
| 225.39 | 0.702 | 10.7 | 1.48 | -- | -- | -- | -- | 0.162 | -- | -- | -- | -- | -- |
| 119.89 | 0.512 | 10.8 | -- | 1.77 | -- | -- | -- | 0.0347 | 17.4 | -- | -- | -- | -- |
| 109.3 | 0.487 | 10.8 | -- | -- | 2.06 | -- | -- | -0.0254 | -- | 2.855e-06 | 663 | -- | -- |
| 283.2 | 0.785 | 10.7 | -- | -- | -- | -- | -- | -0.00242 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 40.70 | wind | 5.0 | 270 | < th | dose independent | rect. | 3 | 3 |
| 2 | 40.93 | atmosphere | 1005.0 | 10 | > th | dose dependent | rect. | 4 | 4 |
| 4 | 41.21 | wind | 5.0 | 270 | < th | dose independent | rect. | 4 | 1 |
| 5 | 41.24 | wind | 7.0 | 270 | < th | dose independent | rect. | 6 | 21 |
| 7 | 41.41 | wind | 5.0 | 270 | < th | dose independent | rect. | 2 | 5 |
| 8 | 41.43 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 3 | 3 |
| 9 | 41.43 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 3 | 3 |
| 13 | 41.70 | wind | 7.0 | 270 | < th | dose independent | rect. | 7 | 19 |
| 19 | 41.92 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 6 | 21 |
| 20 | 41.92 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 6 | 21 |
| 25 | 42.05 | atmosphere | 1000.0 | 270 | > th | dose dependent | rect. | 4 | 1 |
| 26 | 42.07 | wind | 9.0 | 270 | < th | dose independent | rect. | 5 | 23 |
| 32 | 42.21 | temperature | 10.0 | 270 | > th | dose independent | rect. | 3 | 3 |
| 34 | 42.21 | temperature | 30.0 | 270 | < th | dose independent | rect. | 3 | 3 |
| 35 | 42.21 | humidity | 50.0 | 270 | > th | dose independent | rect. | 3 | 3 |
| 38 | 42.21 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 3 | 3 |
| 39 | 42.21 | atmosphere | 1010.0 | 270 | < th | dose independent | rect. | 3 | 3 |
| 41 | 42.21 | radiation | 20.0 | 270 | < th | dose independent | rect. | 3 | 3 |
| 44 | 42.21 | temperature | 10.0 | 270 | > th | dose independent | rect. | 6 | 21 |
| 52 | 42.33 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 2 | 5 |
| 53 | 42.33 | radiation | 40.0 | 270 | < th | dose dependent | rect. | 3 | 3 |
| 54 | 42.33 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 2 | 5 |
| 55 | 42.34 | humidity | 90.0 | 10 | < th | dose independent | rect. | 4 | 4 |
| 60 | 42.40 | wind | 9.0 | 270 | < th | dose dependent | rect. | 3 | 3 |
| 61 | 42.41 | precipitation | 0.1 | 90 | < th | dose independent | rect. | 8 | 20 |
| 63 | 42.41 | precipitation | 0.1 | 90 | < th | dose dependent | rect. | 8 | 20 |
| 72 | 42.54 | wind | 1.0 | 270 | > th | dose independent | rect. | 3 | 2 |
| 81 | 42.63 | radiation | 1.0 | 270 | < th | dose dependent | rect. | 4 | 1 |
| 89 | 42.73 | temperature | 10.0 | 270 | > th | dose independent | rect. | 4 | 1 |
| 91 | 42.73 | temperature | 30.0 | 270 | < th | dose independent | rect. | 4 | 1 |
| 92 | 42.73 | humidity | 50.0 | 270 | > th | dose independent | rect. | 4 | 1 |
| 95 | 42.73 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 4 | 1 |
| 96 | 42.73 | atmosphere | 1010.0 | 270 | < th | dose independent | rect. | 4 | 1 |
| 98 | 42.73 | radiation | 20.0 | 270 | < th | dose independent | rect. | 4 | 1 |
| 101 | 42.73 | temperature | 10.0 | 270 | > th | dose independent | rect. | 5 | 23 |
| 105 | 42.75 | radiation | 40.0 | 270 | < th | dose dependent | rect. | 4 | 1 |
| 112 | 42.79 | wind | 9.0 | 270 | < th | dose dependent | rect. | 4 | 1 |
| 126 | 42.81 | temperature | 10.0 | 90 | > th | dose independent | rect. | 8 | 20 |
| 143 | 42.83 | radiation | 1.0 | 270 | < th | dose independent | rect. | 4 | 1 |
| 168 | 42.90 | temperature | 10.0 | 30 | > th | dose dependent | rect. | 8 | 20 |
| 170 | 42.94 | temperature | 10.0 | 270 | > th | dose independent | rect. | 2 | 5 |
| 172 | 42.94 | temperature | 30.0 | 270 | < th | dose independent | rect. | 2 | 5 |
| 173 | 42.94 | humidity | 50.0 | 270 | > th | dose independent | rect. | 2 | 5 |
| 175 | 42.94 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 2 | 5 |
| 176 | 42.94 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 2 | 5 |
| 177 | 42.94 | radiation | 30.0 | 270 | < th | dose independent | rect. | 2 | 5 |
| 197 | 43.14 | wind | 9.0 | 270 | < th | dose dependent | rect. | 2 | 5 |
| 208 | 43.23 | atmosphere | 1005.0 | 90 | > th | dose independent | rect. | 4 | 4 |
| 209 | 43.23 | wind | 1.0 | 270 | > th | dose independent | rect. | 2 | 5 |
| 226 | 43.35 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 3 | 3 |
| 229 | 43.38 | atmosphere | 995.0 | 30 | > th | dose independent | rect. | 8 | 20 |
| 231 | 43.39 | wind | 9.0 | 90 | < th | dose dependent | rect. | 8 | 20 |
| 232 | 43.42 | radiation | 40.0 | 270 | < th | dose dependent | rect. | 15 | 16 |
| 251 | 43.48 | temperature | 10.0 | 30 | > th | dose dependent | rect. | 4 | 4 |
| 252 | 43.49 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 6 | 21 |
| 254 | 43.50 | wind | 9.0 | 1440 | < th | dose independent | rect. | 5 | 4 |
| 255 | 43.50 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 5 | 4 |
| 258 | 43.50 | humidity | 50.0 | 1440 | > th | dose independent | rect. | 5 | 4 |
| 260 | 43.50 | atmosphere | 995.0 | 1440 | > th | dose independent | rect. | 5 | 4 |
| 261 | 43.50 | atmosphere | 1015.0 | 1440 | < th | dose independent | rect. | 5 | 4 |
| 271 | 43.50 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 9 | 20 |
| 276 | 43.53 | atmosphere | 1005.0 | 270 | > th | dose independent | rect. | 4 | 1 |
| 288 | 43.61 | radiation | 1.0 | 270 | < th | dose dependent | rect. | 3 | 15 |
| 340 | 43.99 | radiation | 20.0 | 270 | < th | dose independent | rect. | 15 | 16 |
| 370 | 44.10 | humidity | 50.0 | 270 | > th | dose dependent | rect. | 4 | 1 |
| 374 | 44.11 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 4 | 1 |
| 390 | 44.15 | humidity | 50.0 | 270 | > th | dose dependent | rect. | 3 | 3 |
| 397 | 44.19 | radiation | 1.0 | 270 | < th | dose independent | rect. | 3 | 15 |
| 399 | 44.19 | humidity | 50.0 | 270 | > th | dose dependent | rect. | 20 | 6 |
| 418 | 44.26 | humidity | 60.0 | 270 | > th | dose dependent | rect. | 22 | 3 |
| 432 | 44.28 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 4 | 1 |
| 436 | 44.28 | radiation | 1.0 | 270 | < th | dose dependent | rect. | 3 | 9 |
| 477 | 44.44 | radiation | 1.0 | 30 | > th | dose independent | rect. | 5 | 3 |
| 478 | 44.44 | wind | 1.0 | 30 | > th | dose independent | rect. | 4 | 4 |
| 503 | 44.49 | wind | 7.0 | 270 | < th | dose independent | rect. | 7 | 9 |
| 598 | 44.77 | radiation | 10.0 | 270 | < th | dose dependent | rect. | 2 | 18 |
| 666 | 44.89 | humidity | 60.0 | 30 | > th | dose dependent | rect. | 22 | 6 |
| 699 | 44.97 | humidity | 50.0 | 270 | > th | dose independent | rect. | 15 | 16 |
| 714 | 45.00 | atmosphere | 1015.0 | 30 | < th | dose independent | rect. | 8 | 20 |
| 737 | 45.04 | radiation | 1.0 | 270 | < th | dose independent | rect. | 3 | 9 |
| 801 | 45.25 | wind | 7.0 | 270 | < th | dose independent | rect. | 22 | 14 |
| 803 | 45.25 | humidity | 50.0 | 270 | > th | dose dependent | rect. | 2 | 5 |
| 834 | 45.33 | wind | 9.0 | 270 | < th | dose dependent | rect. | 7 | 8 |
| 886 | 45.43 | temperature | 15.0 | 270 | > th | dose independent | rect. | 12 | 10 |
| 888 | 45.44 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 2 | 19 |
| 895 | 45.47 | wind | 7.0 | 270 | < th | dose independent | rect. | 21 | 5 |
| 901 | 45.49 | humidity | 80.0 | 270 | > th | dose independent | rect. | 22 | 3 |
| 902 | 45.49 | humidity | 80.0 | 270 | > th | dose independent | rect. | 21 | 5 |
| 932 | 45.54 | temperature | 10.0 | 270 | > th | dose independent | rect. | 21 | 5 |
| 933 | 45.54 | temperature | 30.0 | 270 | < th | dose independent | rect. | 21 | 5 |
| 934 | 45.54 | humidity | 50.0 | 270 | > th | dose independent | rect. | 21 | 5 |
| 937 | 45.54 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 21 | 5 |
| 938 | 45.54 | radiation | 1.0 | 270 | < th | dose independent | rect. | 21 | 5 |
| 944 | 45.54 | temperature | 10.0 | 270 | > th | dose independent | rect. | 2 | 19 |
| 946 | 45.54 | radiation | 1.0 | 270 | < th | dose dependent | rect. | 21 | 5 |
| 965 | 45.57 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 21 | 5 |
| 966 | 45.57 | temperature | 15.0 | 270 | > th | dose independent | rect. | 7 | 9 |
| 968 | 45.57 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 21 | 5 |
| 986 | 45.59 | wind | 7.0 | 270 | < th | dose independent | rect. | 22 | 3 |