Os04g0640700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Alpha-L-arabinofuranosidase/beta-D-xylosidase isoenzyme ARA-I.
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Os04g0640700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Alpha-L-arabinofuranosidase/beta-D-xylosidase isoenzyme ARA-I.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = rect.)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1420.11 | 1.77 | 2.32 | 16 | 0.318 | -20 | -1.28 | 204 | -0.813 | 11.8 | 30.11 | 743 | 18 | 0.633 |
| 1548.07 | 1.85 | 4.49 | -3.66 | 0.878 | -1.07 | -0.899 | -- | -1.06 | 9.9 | 8.812 | 4748 | 10.5 | 3.8 |
| 1426.52 | 1.76 | 2.34 | 15.8 | 0.329 | -20 | -- | 204 | -0.819 | 11.1 | 30.1 | 731 | 18.1 | 3.24 |
| 1534.21 | 1.82 | 4.57 | -3.62 | 0.932 | -1.9 | -- | -- | -1.1 | 17.6 | -27.86 | 2445 | 9.38 | 1.4 |
| 1433.2 | 1.76 | 2.35 | 15.8 | -- | -20.1 | -- | 204 | -0.824 | -- | 30.1 | 729 | 18.1 | 14.3 |
| 1568.92 | 1.86 | 4.5 | -3.74 | 0.577 | -- | 2.02 | -- | -1.02 | 5.03 | -- | -- | -- | -- |
| 1574.25 | 1.86 | 4.49 | -3.74 | 0.669 | -- | -- | -- | -1.03 | 6.72 | -- | -- | -- | -- |
| 1538.46 | 1.83 | 4.56 | -3.61 | -- | -1.11 | -- | -- | -1.07 | -- | -27.32 | 2489 | 9.42 | 1.43 |
| 1842.12 | 2 | 4.54 | -- | 1.15 | -2.73 | -- | -- | -0.588 | 17.7 | 0.1064 | 2457 | 9.09 | 1.78 |
| 1597.6 | 1.87 | 4.51 | -3.72 | -- | -- | -- | -- | -1.02 | -- | -- | -- | -- | -- |
| 1942.67 | 2.06 | 4.4 | -- | 0.626 | -- | -- | -- | -0.613 | 7.07 | -- | -- | -- | -- |
| 1717.56 | 1.93 | 4.24 | -- | -- | -2.5 | -- | -- | 0.164 | -- | -14.74 | 47520 | 9.25 | 2.38 |
| 1963.31 | 2.07 | 4.41 | -- | -- | -- | -- | -- | -0.603 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 1425.43 | temperature | 30 | 720 | > th | dose dependent | rect. | 18 | 1 |
| 15 | 1426.85 | humidity | 50 | 1440 | > th | dose independent | rect. | 16 | 1 |
| 17 | 1431.59 | humidity | 50 | 1440 | < th | dose independent | rect. | 16 | 1 |
| 18 | 1432.45 | humidity | 50 | 1440 | < th | dose dependent | rect. | 16 | 1 |
| 33 | 1441.58 | wind | 1 | 90 | < th | dose independent | rect. | 4 | 1 |
| 34 | 1441.71 | wind | 1 | 90 | < th | dose dependent | rect. | 4 | 1 |
| 35 | 1442.22 | atmosphere | 1005 | 90 | > th | dose independent | rect. | 2 | 7 |
| 51 | 1443.58 | humidity | 70 | 720 | < th | dose independent | rect. | 18 | 2 |
| 78 | 1447.45 | humidity | 70 | 720 | > th | dose independent | rect. | 18 | 8 |
| 81 | 1452.51 | humidity | 70 | 720 | < th | dose dependent | rect. | 18 | 1 |
| 94 | 1453.96 | temperature | 25 | 720 | > th | dose dependent | rect. | 21 | 2 |
| 102 | 1457.06 | atmosphere | 1005 | 10 | > th | dose independent | rect. | 3 | 7 |
| 107 | 1458.19 | humidity | 70 | 720 | > th | dose independent | rect. | 18 | 3 |
| 122 | 1458.96 | atmosphere | 1000 | 90 | > th | dose dependent | rect. | 2 | 7 |
| 123 | 1458.97 | temperature | 30 | 720 | < th | dose independent | rect. | 18 | 8 |
| 126 | 1460.04 | atmosphere | 1005 | 270 | > th | dose independent | rect. | 24 | 7 |
| 127 | 1460.05 | temperature | 30 | 720 | > th | dose independent | rect. | 18 | 1 |
| 146 | 1461.04 | humidity | 70 | 1440 | > th | dose independent | rect. | 18 | 14 |
| 201 | 1466.31 | temperature | 20 | 90 | > th | dose dependent | rect. | 3 | 2 |
| 237 | 1469.70 | humidity | 90 | 90 | > th | dose dependent | rect. | 4 | 1 |
| 310 | 1471.12 | atmosphere | 1000 | 10 | > th | dose dependent | rect. | 2 | 8 |
| 326 | 1471.40 | temperature | 25 | 30 | < th | dose dependent | rect. | 4 | 1 |
| 355 | 1472.93 | temperature | 20 | 90 | > th | dose independent | rect. | 4 | 1 |
| 399 | 1475.20 | wind | 3 | 10 | < th | dose dependent | rect. | 4 | 2 |
| 413 | 1475.41 | humidity | 90 | 90 | > th | dose independent | rect. | 4 | 1 |
| 466 | 1476.24 | humidity | 70 | 1440 | < th | dose dependent | sin | 12 | NA |
| 510 | 1478.10 | temperature | 25 | 30 | < th | dose independent | rect. | 4 | 1 |
| 529 | 1478.44 | atmosphere | 1005 | 90 | > th | dose independent | rect. | 4 | 1 |
| 530 | 1478.50 | humidity | 70 | 720 | < th | dose independent | sin | 12 | NA |
| 554 | 1479.35 | humidity | 60 | 1440 | > th | dose independent | sin | 12 | NA |
| 601 | 1479.95 | temperature | 30 | 1440 | < th | dose independent | rect. | 18 | 6 |
| 684 | 1481.85 | temperature | 30 | 1440 | < th | dose independent | rect. | 18 | 1 |
| 697 | 1482.35 | wind | 1 | 30 | < th | dose independent | rect. | 4 | 8 |
| 703 | 1482.48 | atmosphere | 1010 | 30 | < th | dose dependent | rect. | 4 | 1 |
| 759 | 1483.49 | radiation | 1 | 720 | > th | dose independent | rect. | 18 | 11 |
| 771 | 1483.68 | temperature | 25 | 720 | > th | dose independent | rect. | 21 | 2 |
| 854 | 1484.76 | radiation | 30 | 1440 | > th | dose independent | rect. | 16 | 16 |
| 857 | 1484.81 | radiation | 1 | 720 | > th | dose independent | rect. | 18 | 1 |
| 871 | 1484.89 | wind | 1 | 30 | < th | dose independent | rect. | 4 | 6 |
| 875 | 1484.91 | temperature | 30 | 1440 | < th | dose independent | rect. | 18 | 11 |
| 878 | 1484.97 | atmosphere | 1005 | 10 | > th | dose independent | rect. | 4 | 2 |
| 974 | 1485.70 | temperature | 30 | 1440 | < th | dose independent | rect. | 18 | 14 |
| 982 | 1485.82 | atmosphere | 1005 | 270 | < th | dose dependent | rect. | 9 | 11 |