Os04g0640500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : ABC-1 domain containing protein.
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Os04g0640500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : ABC-1 domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 103.76 | 0.479 | 11.8 | -1.76 | 2.32 | -0.992 | 2.59 | 1.06 | -0.42 | 8.77 | 16.95 | 12 | -- | -- |
| 107.56 | 0.487 | 11.7 | -1.76 | 2.34 | -0.962 | 1.58 | -- | -0.4 | 8.79 | 16.95 | 12 | -- | -- |
| 114.77 | 0.503 | 11.7 | -1.72 | 2.39 | -0.894 | -- | -0.445 | -0.4 | 8.9 | 16.95 | 12 | -- | -- |
| 114.85 | 0.499 | 11.8 | -1.71 | 2.4 | -0.952 | -- | -- | -0.415 | 8.84 | 21.97 | 12 | -- | -- |
| 279.78 | 0.779 | 11.8 | -1.56 | -- | -2.07 | -- | -0.495 | -0.469 | -- | 8.349 | 7 | -- | -- |
| 123.61 | 0.521 | 11.7 | -1.74 | 3.13 | -- | 1.38 | -- | -0.395 | 9.68 | -- | -- | -- | -- |
| 130.83 | 0.536 | 11.7 | -1.68 | 3.12 | -- | -- | -- | -0.392 | 9.71 | -- | -- | -- | -- |
| 276.84 | 0.775 | 11.8 | -1.65 | -- | -2.1 | -- | -- | -0.43 | -- | 7.981 | 4 | -- | -- |
| 191.22 | 0.644 | 11.7 | -- | 2.32 | -0.93 | -- | -- | -0.222 | 8.87 | 12.99 | 8 | -- | -- |
| 711.06 | 1.25 | 11.8 | -1.71 | -- | -- | -- | -- | -0.387 | -- | -- | -- | -- | -- |
| 205.39 | 0.67 | 11.7 | -- | 3.13 | -- | -- | -- | -0.204 | 9.75 | -- | -- | -- | -- |
| 346 | 0.866 | 11.8 | -- | -- | -2.14 | -- | -- | -0.221 | -- | 9.71 | 3 | -- | -- |
| 788.23 | 1.31 | 11.8 | -- | -- | -- | -- | -- | -0.198 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 98.96 | temperature | 10 | 270 | > th | dose dependent | rect. | 14 | 14 |
| 11 | 100.80 | temperature | 20 | 90 | > th | dose independent | rect. | 16 | 14 |
| 12 | 100.97 | temperature | 15 | 10 | > th | dose dependent | rect. | 16 | 13 |
| 19 | 101.35 | temperature | 20 | 270 | > th | dose independent | rect. | 14 | 15 |
| 22 | 101.70 | temperature | 20 | 10 | > th | dose independent | rect. | 16 | 15 |
| 36 | 102.14 | temperature | 30 | 90 | < th | dose dependent | rect. | 13 | 12 |
| 53 | 102.62 | temperature | 10 | 90 | > th | dose dependent | sin | 14 | NA |
| 56 | 102.70 | temperature | 10 | 10 | > th | dose dependent | sin | 13 | NA |
| 69 | 103.17 | temperature | 30 | 270 | < th | dose independent | rect. | 10 | 14 |
| 70 | 103.18 | temperature | 15 | 90 | > th | dose dependent | rect. | 15 | 6 |
| 71 | 103.18 | temperature | 15 | 270 | > th | dose dependent | rect. | 13 | 7 |
| 72 | 103.19 | temperature | 15 | 270 | > th | dose dependent | rect. | 11 | 9 |
| 79 | 103.29 | radiation | 1 | 270 | > th | dose independent | rect. | 4 | 11 |
| 101 | 103.66 | radiation | 20 | 10 | < th | dose dependent | rect. | 24 | 23 |
| 103 | 103.67 | radiation | 20 | 10 | < th | dose dependent | rect. | 1 | 20 |
| 104 | 103.70 | radiation | 20 | 10 | < th | dose dependent | rect. | 16 | 22 |
| 114 | 103.80 | humidity | 70 | 10 | > th | dose dependent | rect. | 1 | 11 |
| 120 | 103.87 | humidity | 70 | 10 | > th | dose dependent | rect. | 1 | 13 |
| 149 | 104.19 | radiation | 20 | 10 | < th | dose dependent | rect. | 13 | 23 |
| 153 | 104.26 | radiation | 20 | 10 | < th | dose dependent | rect. | 11 | 23 |
| 164 | 104.32 | temperature | 25 | 270 | > th | dose independent | rect. | 13 | 6 |
| 166 | 104.33 | radiation | 20 | 10 | < th | dose dependent | no | NA | NA |
| 173 | 104.36 | radiation | 30 | 90 | < th | dose dependent | rect. | 1 | 10 |
| 175 | 104.36 | radiation | 10 | 270 | < th | dose dependent | rect. | 24 | 15 |
| 192 | 104.50 | radiation | 20 | 10 | < th | dose dependent | rect. | 16 | 18 |
| 221 | 104.62 | radiation | 20 | 10 | < th | dose dependent | rect. | 16 | 20 |
| 227 | 104.66 | radiation | 20 | 10 | < th | dose dependent | rect. | 9 | 23 |
| 253 | 104.81 | temperature | 30 | 90 | < th | dose dependent | rect. | 17 | 8 |
| 256 | 104.83 | temperature | 25 | 90 | > th | dose independent | rect. | 15 | 6 |
| 285 | 104.99 | radiation | 20 | 90 | < th | dose dependent | rect. | 24 | 23 |
| 310 | 105.15 | temperature | 10 | 270 | > th | dose dependent | sin | 18 | NA |
| 312 | 105.16 | humidity | 60 | 14400 | > th | dose independent | rect. | 20 | 7 |
| 313 | 105.18 | temperature | 20 | 270 | > th | dose dependent | rect. | 15 | 4 |
| 314 | 105.19 | temperature | 20 | 30 | > th | dose independent | sin | 12 | NA |
| 334 | 105.27 | temperature | 30 | 90 | < th | dose dependent | sin | 16 | NA |
| 344 | 105.30 | radiation | 10 | 10 | < th | dose independent | rect. | 1 | 20 |
| 345 | 105.32 | radiation | 10 | 10 | < th | dose independent | rect. | 24 | 23 |
| 362 | 105.38 | radiation | 10 | 90 | < th | dose independent | rect. | 24 | 21 |
| 363 | 105.38 | humidity | 60 | 10 | > th | dose dependent | rect. | 1 | 9 |
| 376 | 105.43 | radiation | 20 | 10 | < th | dose dependent | rect. | 1 | 11 |
| 382 | 105.45 | humidity | 70 | 90 | > th | dose dependent | rect. | 24 | 17 |
| 399 | 105.50 | temperature | 30 | 270 | < th | dose independent | rect. | 19 | 20 |
| 425 | 105.57 | temperature | 20 | 1440 | > th | dose independent | rect. | 21 | 6 |
| 436 | 105.62 | radiation | 10 | 10 | < th | dose dependent | sin | 1 | NA |
| 438 | 105.63 | temperature | 20 | 1440 | < th | dose independent | rect. | 21 | 6 |
| 439 | 105.63 | radiation | 20 | 4320 | < th | dose dependent | rect. | 22 | 7 |
| 444 | 105.65 | radiation | 30 | 10 | < th | dose dependent | rect. | 1 | 9 |
| 448 | 105.66 | temperature | 20 | 1440 | > th | dose independent | rect. | 23 | 2 |
| 470 | 105.72 | temperature | 20 | 1440 | > th | dose independent | rect. | 6 | 1 |
| 474 | 105.73 | temperature | 20 | 1440 | < th | dose independent | rect. | 23 | 2 |
| 599 | 105.96 | humidity | 70 | 10 | > th | dose dependent | rect. | 1 | 18 |
| 643 | 106.06 | radiation | 20 | 90 | < th | dose independent | rect. | 1 | 10 |
| 647 | 106.08 | humidity | 50 | 270 | > th | dose independent | rect. | 9 | 15 |
| 690 | 106.20 | humidity | 80 | 10 | > th | dose independent | rect. | 1 | 11 |
| 743 | 106.29 | temperature | 30 | 270 | < th | dose independent | rect. | 5 | 10 |
| 746 | 106.30 | humidity | 80 | 90 | > th | dose independent | rect. | 1 | 10 |
| 764 | 106.35 | humidity | 80 | 90 | > th | dose independent | rect. | 1 | 13 |
| 767 | 106.36 | temperature | 20 | 1440 | > th | dose independent | rect. | 1 | 1 |
| 773 | 106.36 | humidity | 70 | 10 | > th | dose dependent | rect. | 1 | 20 |
| 799 | 106.44 | temperature | 20 | 1440 | > th | dose independent | rect. | 20 | 11 |
| 809 | 106.46 | temperature | 20 | 1440 | < th | dose independent | rect. | 20 | 11 |
| 810 | 106.46 | radiation | 10 | 90 | < th | dose independent | rect. | 24 | 23 |
| 820 | 106.47 | radiation | 20 | 10 | < th | dose dependent | rect. | 7 | 23 |
| 917 | 106.66 | humidity | 70 | 10 | > th | dose dependent | sin | 4 | NA |
| 928 | 106.68 | radiation | 40 | 14400 | < th | dose dependent | rect. | 22 | 7 |