Os04g0640200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Hypothetical protein.
FiT-DB / Search/ Help/ Sample detail
|
Os04g0640200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
|
Description : Hypothetical protein.
|
|
log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
|
_____ |
|
__
Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 322.72 | 0.844 | 3 | -0.52 | 0.0162 | 1.58 | 1.61 | -0.442 | -0.126 | 7.8 | 49.56 | 340 | -- | -- |
| 322.75 | 0.837 | 3 | -0.509 | 0.013 | 1.49 | 1.61 | -- | -0.127 | 7.79 | 49.38 | 340 | -- | -- |
| 329.87 | 0.846 | 3.01 | -0.458 | 0.00342 | 1.38 | -- | -0.439 | -0.134 | 19.7 | 49.73 | 318 | -- | -- |
| 329.81 | 0.846 | 3.01 | -0.437 | 0.0291 | 1.3 | -- | -- | -0.146 | 20.9 | 49.03 | 309 | -- | -- |
| 329.85 | 0.846 | 3.01 | -0.457 | -- | 1.39 | -- | -0.461 | -0.134 | -- | 49.64 | 312 | -- | -- |
| 334.11 | 0.857 | 3.02 | -0.384 | 0.136 | -- | -1.16 | -- | -0.171 | 20.9 | -- | -- | -- | -- |
| 338.68 | 0.862 | 3.02 | -0.344 | 0.14 | -- | -- | -- | -0.171 | 20.8 | -- | -- | -- | -- |
| 329.88 | 0.846 | 3 | -0.447 | -- | 1.3 | -- | -- | -0.135 | -- | 49.64 | 312 | -- | -- |
| 334.82 | 0.852 | 3 | -- | 0.0587 | 1.12 | -- | -- | -0.0883 | 21.2 | 49.33 | 309 | -- | -- |
| 339.78 | 0.861 | 3.01 | -0.344 | -- | -- | -- | -- | -0.172 | -- | -- | -- | -- | -- |
| 341.8 | 0.865 | 3.01 | -- | 0.141 | -- | -- | -- | -0.132 | 20.6 | -- | -- | -- | -- |
| 335.01 | 0.852 | 2.99 | -- | -- | 1.14 | -- | -- | -0.0911 | -- | 49.25 | 309 | -- | -- |
| 342.91 | 0.864 | 3 | -- | -- | -- | -- | -- | -0.134 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
|
Histogram 
|
Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 309.74 | wind | 1 | 90 | < th | dose dependent | rect. | 12 | 1 |
| 2 | 309.88 | humidity | 90 | 10 | > th | dose independent | rect. | 13 | 1 |
| 10 | 309.88 | humidity | 90 | 10 | > th | dose dependent | rect. | 13 | 1 |
| 18 | 310.17 | humidity | 90 | 90 | > th | dose independent | rect. | 13 | 1 |
| 20 | 310.17 | humidity | 90 | 90 | > th | dose dependent | rect. | 13 | 1 |
| 42 | 312.06 | wind | 1 | 90 | < th | dose independent | rect. | 12 | 1 |
| 43 | 312.42 | radiation | 10 | 30 | < th | dose dependent | rect. | 13 | 2 |
| 58 | 314.82 | radiation | 10 | 10 | < th | dose dependent | rect. | 5 | 10 |
| 61 | 315.27 | humidity | 70 | 30 | < th | dose independent | rect. | 19 | 1 |
| 75 | 315.69 | humidity | 80 | 10 | < th | dose independent | rect. | 5 | 1 |
| 80 | 315.69 | humidity | 80 | 10 | < th | dose dependent | rect. | 5 | 1 |
| 94 | 316.08 | humidity | 70 | 30 | < th | dose dependent | rect. | 19 | 1 |
| 109 | 316.25 | humidity | 70 | 90 | < th | dose independent | rect. | 19 | 14 |
| 173 | 317.48 | temperature | 30 | 90 | > th | dose independent | rect. | 18 | 1 |
| 187 | 317.56 | humidity | 50 | 270 | > th | dose independent | rect. | 14 | 12 |
| 188 | 317.75 | radiation | 10 | 10 | < th | dose independent | rect. | 14 | 1 |
| 190 | 317.86 | wind | 1 | 10 | > th | dose dependent | rect. | 5 | 2 |
| 196 | 318.03 | humidity | 70 | 90 | < th | dose dependent | rect. | 19 | 14 |
| 216 | 318.38 | temperature | 30 | 90 | > th | dose dependent | rect. | 18 | 1 |
| 251 | 318.98 | humidity | 50 | 270 | > th | dose independent | rect. | 6 | 22 |
| 261 | 319.19 | temperature | 30 | 10 | > th | dose dependent | rect. | 17 | 18 |
| 283 | 320.48 | wind | 3 | 10 | > th | dose independent | rect. | 5 | 2 |
| 300 | 320.74 | humidity | 50 | 10 | > th | dose independent | rect. | 10 | 19 |
| 303 | 320.76 | humidity | 50 | 270 | > th | dose independent | rect. | 7 | 19 |
| 304 | 320.78 | humidity | 70 | 90 | > th | dose independent | rect. | 17 | 11 |
| 327 | 321.14 | humidity | 50 | 10 | > th | dose independent | rect. | 7 | 22 |
| 332 | 321.22 | radiation | 10 | 10 | < th | dose dependent | rect. | 5 | 2 |
| 337 | 321.32 | humidity | 70 | 10 | > th | dose independent | rect. | 16 | 13 |
| 338 | 321.35 | temperature | 30 | 90 | > th | dose dependent | rect. | 8 | 1 |
| 352 | 321.37 | wind | 3 | 10 | > th | dose dependent | rect. | 2 | 5 |
| 357 | 321.41 | temperature | 30 | 90 | > th | dose independent | rect. | 8 | 1 |
| 374 | 321.46 | humidity | 50 | 90 | > th | dose independent | rect. | 10 | 18 |
| 400 | 321.67 | humidity | 50 | 270 | < th | dose independent | rect. | 12 | 5 |
| 440 | 321.76 | humidity | 70 | 90 | > th | dose independent | rect. | 15 | 13 |
| 502 | 321.92 | humidity | 50 | 270 | < th | dose dependent | rect. | 12 | 5 |
| 539 | 322.09 | temperature | 20 | 10 | < th | dose dependent | rect. | 6 | 1 |
| 544 | 322.12 | temperature | 30 | 10 | < th | dose dependent | rect. | 5 | 2 |
| 631 | 322.51 | radiation | 10 | 10 | < th | dose independent | rect. | 5 | 10 |
| 640 | 322.58 | humidity | 50 | 30 | > th | dose independent | rect. | 11 | 15 |
| 643 | 322.67 | humidity | 50 | 270 | < th | dose independent | sin | 16 | NA |
| 655 | 322.82 | humidity | 50 | 270 | > th | dose independent | sin | 15 | NA |
| 656 | 322.82 | humidity | 50 | 270 | > th | dose independent | sin | 18 | NA |
| 665 | 322.87 | humidity | 50 | 270 | < th | dose dependent | sin | 16 | NA |
| 666 | 322.88 | wind | 3 | 10 | < th | dose independent | rect. | 13 | 1 |
| 668 | 322.89 | humidity | 50 | 270 | > th | dose independent | rect. | 3 | 23 |
| 673 | 322.90 | humidity | 50 | 270 | > th | dose independent | rect. | 20 | 23 |
| 698 | 322.98 | temperature | 25 | 90 | < th | dose dependent | rect. | 4 | 1 |
| 738 | 323.20 | radiation | 10 | 90 | < th | dose independent | rect. | 4 | 10 |
| 803 | 323.36 | humidity | 50 | 270 | < th | dose independent | no | NA | NA |
| 968 | 323.48 | humidity | 50 | 270 | < th | dose dependent | no | NA | NA |