Os04g0639100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os04g0639100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose dependent, type of G = sin)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 615.2 | 1.17 | 8.54 | -1.55 | 0.303 | -11.4 | -2.16 | -13.2 | -0.451 | 22.1 | 1.054 | 1579 | 19.5 | -- |
| 640.59 | 1.18 | 8.77 | -2.01 | 0.177 | -7.89 | -2.06 | -- | -0.625 | 22.6 | 2.205 | 1605 | 19.8 | -- |
| 630.79 | 1.17 | 8.56 | -1.47 | 0.304 | -10.8 | -- | -11.5 | -0.438 | 0.832 | 1.291 | 1584 | 19.7 | -- |
| 660.29 | 1.2 | 8.74 | -2.07 | 0.341 | -8.12 | -- | -- | -0.61 | 2.85 | 2.148 | 1611 | 20.1 | -- |
| 636 | 1.17 | 8.56 | -1.47 | -- | -10.6 | -- | -11.1 | -0.434 | -- | 1.291 | 1589 | 19.6 | -- |
| 1363.58 | 1.73 | 8.52 | -0.11 | 1.08 | -- | 0.654 | -- | 0.459 | 17 | -- | -- | -- | -- |
| 1364.32 | 1.73 | 8.52 | -0.11 | 1.09 | -- | -- | -- | 0.462 | 17.3 | -- | -- | -- | -- |
| 664.26 | 1.2 | 8.74 | -2.03 | -- | -7.98 | -- | -- | -0.601 | -- | 2.177 | 1607 | 19.9 | -- |
| 758.22 | 1.28 | 8.73 | -- | 0.157 | -7.01 | -- | -- | -0.334 | 2.38 | 2.275 | 1623 | 20.1 | -- |
| 1426.61 | 1.76 | 8.51 | -0.148 | -- | -- | -- | -- | 0.435 | -- | -- | -- | -- | -- |
| 1364.64 | 1.73 | 8.52 | -- | 1.09 | -- | -- | -- | 0.474 | 17.2 | -- | -- | -- | -- |
| 758 | 1.28 | 8.67 | -- | -- | -6.91 | -- | -- | -0.28 | -- | 2.309 | 1620 | 20 | -- |
| 1427.19 | 1.76 | 8.5 | -- | -- | -- | -- | -- | 0.451 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 713.81 | radiation | 1 | 1440 | < th | dose dependent | rect. | 7 | 23 |
| 5 | 719.80 | radiation | 1 | 1440 | < th | dose dependent | rect. | 5 | 14 |
| 14 | 722.39 | radiation | 1 | 1440 | < th | dose dependent | rect. | 3 | 16 |
| 16 | 722.54 | radiation | 1 | 1440 | < th | dose dependent | rect. | 12 | 18 |
| 21 | 722.74 | radiation | 1 | 1440 | < th | dose dependent | rect. | 5 | 23 |
| 65 | 725.33 | radiation | 1 | 1440 | < th | dose dependent | no | NA | NA |
| 67 | 725.70 | radiation | 1 | 1440 | < th | dose dependent | rect. | 12 | 23 |
| 71 | 726.50 | radiation | 1 | 1440 | < th | dose dependent | sin | 23 | NA |
| 75 | 728.48 | radiation | 1 | 1440 | < th | dose dependent | rect. | 15 | 23 |
| 79 | 729.15 | radiation | 1 | 1440 | > th | dose independent | rect. | 7 | 23 |
| 97 | 735.98 | radiation | 1 | 1440 | < th | dose independent | rect. | 7 | 23 |
| 100 | 737.34 | radiation | 1 | 1440 | < th | dose dependent | sin | 15 | NA |
| 120 | 740.31 | radiation | 1 | 1440 | < th | dose dependent | rect. | 7 | 12 |
| 141 | 743.24 | radiation | 1 | 1440 | > th | dose independent | sin | 23 | NA |
| 162 | 745.60 | radiation | 1 | 1440 | < th | dose independent | rect. | 12 | 18 |
| 182 | 747.90 | radiation | 1 | 1440 | < th | dose dependent | rect. | 13 | 6 |
| 202 | 749.51 | radiation | 1 | 1440 | < th | dose independent | sin | 23 | NA |
| 251 | 754.37 | radiation | 1 | 1440 | > th | dose independent | rect. | 5 | 14 |
| 266 | 755.18 | radiation | 1 | 1440 | < th | dose independent | rect. | 5 | 14 |
| 272 | 755.68 | radiation | 1 | 1440 | > th | dose independent | no | NA | NA |
| 322 | 756.00 | radiation | 1 | 1440 | < th | dose independent | rect. | 3 | 16 |
| 348 | 756.88 | radiation | 1 | 1440 | > th | dose independent | rect. | 12 | 23 |
| 361 | 757.58 | radiation | 1 | 1440 | < th | dose independent | rect. | 5 | 23 |
| 387 | 758.46 | radiation | 1 | 1440 | < th | dose independent | no | NA | NA |
| 392 | 759.18 | radiation | 1 | 1440 | > th | dose independent | rect. | 7 | 12 |
| 403 | 759.41 | radiation | 1 | 1440 | < th | dose independent | rect. | 12 | 23 |
| 412 | 760.05 | radiation | 1 | 1440 | > th | dose independent | sin | 14 | NA |
| 439 | 763.02 | radiation | 1 | 1440 | > th | dose independent | rect. | 15 | 23 |
| 458 | 765.57 | humidity | 90 | 43200 | > th | dose dependent | rect. | 20 | 2 |
| 460 | 765.84 | radiation | 1 | 1440 | < th | dose independent | rect. | 15 | 23 |
| 476 | 767.74 | radiation | 1 | 1440 | < th | dose independent | sin | 14 | NA |
| 499 | 770.78 | radiation | 1 | 1440 | < th | dose independent | rect. | 7 | 12 |
| 545 | 775.70 | radiation | 1 | 1440 | > th | dose independent | rect. | 12 | 7 |
| 593 | 778.68 | humidity | 90 | 43200 | > th | dose independent | rect. | 20 | 2 |
| 644 | 783.08 | humidity | 90 | 43200 | < th | dose independent | rect. | 20 | 2 |
| 663 | 784.56 | temperature | 25 | 14400 | < th | dose independent | rect. | 17 | 4 |
| 675 | 785.60 | temperature | 25 | 14400 | > th | dose independent | rect. | 17 | 4 |
| 677 | 785.85 | radiation | 1 | 1440 | < th | dose independent | rect. | 13 | 6 |
| 746 | 790.09 | temperature | 20 | 14400 | > th | dose dependent | rect. | 19 | 1 |
| 758 | 791.33 | temperature | 20 | 14400 | > th | dose dependent | rect. | 19 | 3 |
| 772 | 792.31 | temperature | 10 | 14400 | > th | dose dependent | rect. | 1 | 1 |
| 774 | 792.63 | temperature | 30 | 14400 | < th | dose dependent | rect. | 1 | 1 |
| 792 | 794.06 | temperature | 20 | 14400 | > th | dose dependent | rect. | 21 | 1 |
| 885 | 798.47 | temperature | 10 | 14400 | > th | dose dependent | rect. | 21 | 7 |
| 908 | 798.82 | temperature | 30 | 14400 | < th | dose dependent | rect. | 21 | 7 |
| 913 | 798.89 | temperature | 30 | 14400 | < th | dose dependent | rect. | 21 | 9 |
| 923 | 799.10 | humidity | 70 | 14400 | < th | dose independent | rect. | 19 | 2 |
| 968 | 799.89 | temperature | 20 | 14400 | > th | dose dependent | sin | 13 | NA |