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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os04g0639000

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 4.72 (0.0707) R2 : 0.421
β1 : -3.14 (0.418) R2dD : 0.233 R2D : -0.0877
β2 : 0.668 (0.161) R2dC : 0.0182 R2C : 0.0236
β3 : -3.97 (0.249) R2dE : 0.406 R2E : 0.316
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : 7.38 (1.18) R2dD*E : 0.133 R2D*E : -0.178
γ1 : -0.544 (0.17) R2dN8 : 0.0262 R2N8 : -0.0734
σ : 1.25
deviance : 722.54
__
_____
C
peak time of C : 0.962
E
wheather : radiation
threshold : 1.194
memory length : 4250
response mode : < th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 4.92
open length of G : 0.95

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
720.66 1.26 4.74 -3.26 0.582 -3.98 -0.97 7 -0.593 23.9 1.149 4251 4.93 0.954
777.75 1.3 4.69 -2.23 0.507 -4.5 -1.52 -- -0.328 0.102 0.9654 4251 4.77 1.94
722.54 1.25 4.72 -3.14 0.668 -3.97 -- 7.38 -0.544 0.962 1.194 4250 4.92 0.95
772.71 1.29 4.64 -2.03 0.617 -4.21 -- -- -0.265 1.58 1.064 4284 4.57 2.3
743.99 1.27 4.71 -3.14 -- -4.12 -- 7.07 -0.552 -- 1.203 4249 4.93 0.95
1142.55 1.58 4.43 -0.805 0.821 -- -0.0846 -- 0.666 1.79 -- -- -- --
1142.57 1.58 4.43 -0.802 0.822 -- -- -- 0.667 1.85 -- -- -- --
794.05 1.31 4.64 -1.99 -- -4.46 -- -- -0.242 -- 1.07 4270 4.59 2.4
747.21 1.27 4.62 -- 0.689 -4.04 -- -- 0.325 1.07 1.09 4303 4.28 1.15
1183.45 1.61 4.42 -0.768 -- -- -- -- 0.685 -- -- -- -- --
1159.52 1.59 4.41 -- 0.807 -- -- -- 0.756 1.82 -- -- -- --
759.79 1.28 4.48 -- -- -4.03 -- -- 0.39 -- 1.014 4285 4.53 0.867
1199.02 1.62 4.4 -- -- -- -- -- 0.771 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 737.09 radiation 1 4320 > th dose independent rect. 18 13
3 743.80 radiation 1 4320 < th dose dependent rect. 5 1
4 748.62 radiation 1 43200 > th dose independent rect. 18 1
15 750.06 radiation 1 4320 < th dose dependent rect. 24 6
16 750.09 radiation 1 4320 < th dose dependent rect. 2 4
21 750.35 radiation 1 4320 < th dose dependent rect. 21 9
25 750.68 radiation 1 4320 < th dose independent rect. 18 13
27 752.09 humidity 90 43200 > th dose independent rect. 4 19
28 752.68 humidity 80 43200 > th dose independent rect. 9 5
29 752.72 humidity 80 43200 < th dose independent rect. 9 5
30 753.05 wind 3 43200 < th dose independent rect. 11 1
32 753.22 radiation 1 43200 < th dose independent rect. 18 13
37 754.03 wind 3 43200 > th dose independent rect. 11 1
43 754.49 humidity 90 43200 > th dose independent rect. 4 12
45 754.80 wind 5 43200 < th dose dependent rect. 11 1
48 754.86 humidity 90 43200 > th dose independent rect. 3 14
50 754.89 wind 3 43200 > th dose dependent rect. 9 6
51 754.95 humidity 80 43200 > th dose independent rect. 8 9
52 755.03 radiation 1 43200 > th dose independent rect. 18 13
56 755.25 radiation 1 43200 > th dose independent rect. 12 20
59 755.31 radiation 1 43200 < th dose independent rect. 12 20
65 755.56 radiation 1 43200 > th dose independent sin 14 NA
70 755.80 wind 5 43200 < th dose independent rect. 10 20
71 755.81 wind 5 43200 > th dose independent rect. 10 20
75 755.97 wind 5 43200 > th dose independent rect. 9 18
83 756.12 humidity 90 43200 < th dose independent rect. 5 18
88 756.17 wind 5 43200 < th dose independent rect. 9 18
107 756.48 humidity 80 43200 > th dose dependent rect. 7 8
126 756.57 humidity 80 43200 > th dose dependent rect. 6 10
128 756.60 wind 5 43200 < th dose independent sin 0 NA
130 756.66 radiation 1 43200 < th dose independent sin 14 NA
143 756.86 wind 5 43200 > th dose independent sin 0 NA
146 756.94 humidity 90 43200 > th dose independent sin 1 NA
147 756.94 wind 5 43200 < th dose independent rect. 5 12
154 756.99 radiation 1 43200 > th dose independent rect. 16 15
168 757.17 humidity 90 43200 > th dose independent rect. 7 2
192 757.39 wind 5 43200 < th dose independent rect. 9 7
201 757.50 wind 5 43200 > th dose independent rect. 5 12
214 757.53 humidity 70 43200 > th dose dependent rect. 11 3
215 757.54 wind 5 43200 > th dose independent rect. 5 16
219 757.57 wind 5 43200 < th dose independent rect. 5 17
227 757.62 humidity 80 43200 < th dose independent rect. 8 10
231 757.64 wind 5 43200 > th dose independent rect. 9 7
250 757.78 humidity 90 43200 > th dose dependent rect. 5 19
273 758.00 radiation 1 43200 > th dose independent rect. 12 7
284 758.02 humidity 80 43200 > th dose dependent rect. 5 13
287 758.03 wind 9 43200 < th dose dependent rect. 9 6
294 758.07 radiation 1 43200 < th dose independent rect. 12 7
295 758.07 radiation 1 43200 < th dose independent rect. 12 14
323 758.17 wind 9 43200 < th dose dependent rect. 10 4
334 758.25 humidity 80 43200 > th dose dependent sin 0 NA
344 758.32 radiation 1 43200 > th dose independent rect. 17 23
398 758.68 radiation 1 43200 > th dose independent no NA NA
399 758.68 radiation 1 43200 > th dose independent rect. 4 15
487 758.91 radiation 1 4320 > th dose independent sin 11 NA
493 758.98 radiation 1 43200 < th dose independent rect. 17 23
551 759.32 humidity 90 43200 < th dose independent rect. 8 1
553 759.33 radiation 1 43200 < th dose independent rect. 24 19
559 759.34 radiation 1 43200 < th dose independent rect. 3 16
569 759.35 radiation 1 43200 < th dose independent no NA NA
581 759.35 radiation 1 43200 < th dose independent rect. 3 23
691 759.68 radiation 1 43200 > th dose independent rect. 4 11
712 759.70 radiation 1 43200 < th dose independent rect. 24 15
717 759.71 radiation 1 43200 < th dose independent rect. 3 12
740 759.75 humidity 90 43200 < th dose independent sin 1 NA
757 759.88 radiation 1 43200 < th dose independent rect. 23 9
764 759.91 radiation 1 43200 > th dose independent rect. 4 4
775 759.92 radiation 1 43200 < th dose independent rect. 3 5
877 760.40 radiation 1 43200 < th dose independent rect. 16 3
878 760.40 radiation 1 43200 < th dose independent rect. 16 10
956 760.68 wind 3 43200 > th dose dependent rect. 5 12
977 760.79 wind 3 43200 > th dose dependent sin 0 NA