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Os04g0638700

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 12.9 (0.0253) R2 : 0.601
β1 : -- (--) R2dD : -- R2D : --
β2 : 1.23 (0.0606) R2dC : 0.363 R2C : 0.323
β3 : 1.64 (0.0977) R2dE : 0.289 R2E : 0.238
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.0538 (0.0565) R2dN8 : 0.00145 R2N8 : -0.0133
σ : 0.466
deviance : 100.15
__
_____
C
peak time of C : 9.95
E
wheather : temperature
threshold : 7.654
memory length : 7851
response mode : > th
dose dependency : dose dependent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
84.59 0.432 13.1 -1.57 1.27 1.67 1.3 -6.7 -0.28 10.2 24.21 1324 -- --
90.68 0.444 13 -0.302 1.22 1.7 1.43 -- -0.153 10.1 14.61 7861 -- --
90.78 0.444 13.1 -1.41 1.3 1.61 -- -6.07 -0.325 10.3 23.03 1242 -- --
99.14 0.464 13 -0.227 1.23 1.77 -- -- -0.105 9.97 7.552 7889 -- --
180.95 0.63 13 0.207 -- 1.5 -- -1.12 0.0999 -- 21.5 4496 -- --
141.83 0.558 12.9 0.618 1.18 -- 1.47 -- 0.375 9.88 -- -- -- --
150.14 0.574 12.8 0.674 1.17 -- -- -- 0.378 9.85 -- -- -- --
173.14 0.616 12.9 0.294 -- 2.02 -- -- 0.109 -- 7.552 7889 -- --
100.15 0.466 12.9 -- 1.23 1.64 -- -- -0.0538 9.95 7.654 7851 -- --
232.02 0.712 12.9 0.662 -- -- -- -- 0.378 -- -- -- -- --
162.12 0.596 12.9 -- 1.17 -- -- -- 0.303 9.8 -- -- -- --
175.3 0.619 13 -- -- 2.11 -- -- 0.0663 -- 7.552 7889 -- --
243.58 0.728 12.9 -- -- -- -- -- 0.305 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 78.97 humidity 90.0 43200 > th dose independent rect. 22 1
2 79.38 humidity 90.0 43200 > th dose dependent rect. 22 1
5 79.92 humidity 90.0 43200 > th dose dependent rect. 3 21
10 80.16 humidity 90.0 43200 > th dose dependent rect. 18 6
15 80.29 humidity 90.0 43200 < th dose independent rect. 22 1
29 80.57 humidity 90.0 43200 > th dose independent rect. 20 3
33 80.64 humidity 90.0 43200 > th dose dependent rect. 3 10
35 80.68 radiation 1.0 43200 > th dose independent rect. 18 1
45 80.69 humidity 90.0 43200 > th dose dependent sin 3 NA
48 80.71 humidity 90.0 43200 > th dose independent rect. 18 5
49 80.72 humidity 90.0 43200 > th dose dependent rect. 4 6
56 80.79 humidity 90.0 43200 > th dose dependent rect. 15 22
61 80.83 humidity 90.0 43200 > th dose independent rect. 2 22
62 80.83 humidity 90.0 43200 > th dose dependent rect. 3 13
77 80.91 humidity 90.0 43200 > th dose dependent rect. 8 18
88 80.97 humidity 90.0 43200 > th dose dependent no NA NA
99 81.07 humidity 90.0 43200 > th dose dependent rect. 5 2
105 81.11 humidity 90.0 43200 > th dose dependent rect. 19 23
110 81.13 humidity 90.0 43200 > th dose dependent rect. 21 23
112 81.14 humidity 90.0 43200 > th dose dependent rect. 9 23
121 81.18 humidity 90.0 43200 > th dose dependent rect. 11 23
151 81.37 humidity 90.0 43200 > th dose dependent sin 18 NA
205 81.69 humidity 90.0 43200 > th dose independent rect. 2 11
208 81.71 humidity 90.0 43200 > th dose independent rect. 17 21
217 81.75 humidity 90.0 43200 < th dose independent rect. 18 5
250 81.95 humidity 90.0 43200 > th dose independent rect. 3 8
253 81.96 radiation 1.0 43200 < th dose dependent rect. 18 1
254 81.96 radiation 1.0 43200 < th dose dependent rect. 18 3
266 81.98 radiation 1.0 43200 < th dose dependent rect. 18 13
279 82.03 humidity 90.0 43200 > th dose independent no NA NA
281 82.03 radiation 1.0 43200 < th dose dependent rect. 18 10
283 82.04 humidity 90.0 43200 > th dose independent sin 4 NA
299 82.09 humidity 90.0 43200 > th dose independent rect. 22 23
305 82.10 radiation 1.0 43200 < th dose dependent rect. 5 2
324 82.13 temperature 20.0 43200 < th dose independent rect. 5 1
334 82.16 humidity 90.0 43200 > th dose independent rect. 18 1
335 82.16 humidity 90.0 43200 > th dose independent rect. 9 16
338 82.17 temperature 20.0 43200 < th dose independent rect. 4 3
345 82.20 temperature 20.0 43200 > th dose independent rect. 4 3
349 82.22 temperature 20.0 43200 > th dose independent rect. 5 1
362 82.25 humidity 90.0 43200 > th dose independent rect. 8 23
370 82.28 humidity 90.0 43200 > th dose independent rect. 11 23
473 82.52 humidity 90.0 43200 < th dose independent rect. 7 20
486 82.55 temperature 20.0 43200 > th dose dependent rect. 7 1
509 82.59 humidity 90.0 43200 > th dose independent sin 18 NA
514 82.60 humidity 90.0 43200 < th dose independent rect. 8 18
515 82.60 radiation 1.0 43200 < th dose dependent rect. 18 21
524 82.62 wind 5.0 43200 > th dose dependent rect. 9 7
530 82.63 humidity 90.0 43200 < th dose independent rect. 9 16
551 82.69 radiation 1.0 43200 < th dose dependent sin 12 NA
577 82.75 humidity 90.0 43200 < th dose independent rect. 18 1
578 82.75 humidity 80.0 43200 > th dose independent rect. 11 2
596 82.80 wind 7.0 43200 > th dose independent rect. 5 11
597 82.80 wind 7.0 43200 < th dose independent rect. 5 11
601 82.80 radiation 1.0 43200 < th dose dependent rect. 13 19
613 82.83 radiation 1.0 43200 > th dose independent rect. 18 14
616 82.84 humidity 80.0 43200 < th dose independent rect. 11 3
635 82.86 wind 7.0 43200 < th dose independent rect. 5 13
657 82.88 wind 7.0 43200 > th dose dependent rect. 9 12
661 82.89 humidity 90.0 43200 < th dose independent rect. 3 22
675 82.91 wind 7.0 43200 > th dose independent rect. 5 13
688 82.93 precipitation 0.1 43200 < th dose independent rect. 9 1
694 82.93 precipitation 0.1 43200 < th dose dependent rect. 9 1
704 82.95 humidity 90.0 43200 < th dose independent sin 18 NA
705 82.95 radiation 1.0 43200 > th dose independent rect. 6 2
709 82.95 wind 5.0 43200 > th dose dependent sin 22 NA
711 82.96 radiation 1.0 43200 < th dose independent rect. 6 2
748 83.00 temperature 20.0 43200 > th dose dependent sin 6 NA
758 83.01 temperature 20.0 43200 > th dose dependent rect. 24 13
762 83.01 temperature 20.0 43200 > th dose dependent rect. 21 17
794 83.04 radiation 1.0 43200 < th dose dependent rect. 5 10
803 83.05 temperature 20.0 43200 > th dose dependent rect. 2 10
812 83.06 radiation 1.0 43200 > th dose independent rect. 18 21
865 83.11 radiation 1.0 43200 < th dose independent rect. 17 4
877 83.11 radiation 1.0 43200 < th dose dependent rect. 5 14
888 83.12 radiation 1.0 43200 < th dose independent rect. 17 2
894 83.12 radiation 1.0 43200 < th dose independent rect. 17 11
906 83.13 precipitation 0.1 43200 > th dose independent rect. 9 1
914 83.13 precipitation 0.1 43200 > th dose dependent rect. 9 1
918 83.13 radiation 1.0 43200 < th dose dependent rect. 2 13
929 83.14 wind 7.0 43200 < th dose independent rect. 5 16
985 83.16 radiation 1.0 43200 < th dose dependent no NA NA