Os04g0638200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os04g0638200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 68.1 | 0.388 | 6.81 | 0.8 | 0.218 | 2.95 | 0.258 | 3.38 | 0.0941 | 22.1 | 20.2 | 4440 | -- | -- |
| 71.64 | 0.394 | 6.68 | 1.03 | 0.225 | 1.84 | 0.204 | -- | 0.255 | 22 | 22.84 | 5762 | -- | -- |
| 68.32 | 0.385 | 6.8 | 0.79 | 0.22 | 2.94 | -- | 3.37 | 0.0951 | 21.6 | 20.2 | 4438 | -- | -- |
| 71.57 | 0.394 | 6.7 | 0.921 | 0.226 | 1.68 | -- | -- | 0.204 | 21.6 | 23.06 | 5734 | -- | -- |
| 71.19 | 0.393 | 6.8 | 0.791 | -- | 2.98 | -- | 3.45 | 0.0921 | -- | 20.14 | 4429 | -- | -- |
| 104.4 | 0.479 | 6.79 | 0.0543 | 0.231 | -- | 0.144 | -- | -0.188 | 21.3 | -- | -- | -- | -- |
| 104.46 | 0.479 | 6.79 | 0.0499 | 0.233 | -- | -- | -- | -0.188 | 21 | -- | -- | -- | -- |
| 73.12 | 0.398 | 6.69 | 0.916 | -- | 1.68 | -- | -- | 0.232 | -- | 22.75 | 4397 | -- | -- |
| 76.31 | 0.407 | 6.73 | -- | 0.227 | 1.34 | -- | -- | 0.0436 | 21.6 | 25.09 | 1501 | -- | -- |
| 107.57 | 0.485 | 6.78 | 0.0502 | -- | -- | -- | -- | -0.189 | -- | -- | -- | -- | -- |
| 104.52 | 0.478 | 6.79 | -- | 0.233 | -- | -- | -- | -0.193 | 21 | -- | -- | -- | -- |
| 79.37 | 0.415 | 6.73 | -- | -- | 1.34 | -- | -- | 0.0418 | -- | 25 | 1526 | -- | -- |
| 107.64 | 0.484 | 6.78 | -- | -- | -- | -- | -- | -0.195 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 65.38 | temperature | 20 | 4320 | < th | dose dependent | rect. | 3 | 1 |
| 3 | 65.50 | temperature | 20 | 4320 | < th | dose dependent | rect. | 1 | 4 |
| 83 | 66.60 | temperature | 20 | 4320 | < th | dose dependent | sin | 9 | NA |
| 91 | 66.66 | temperature | 10 | 4320 | > th | dose dependent | rect. | 24 | 4 |
| 116 | 66.75 | temperature | 10 | 1440 | > th | dose dependent | rect. | 22 | 8 |
| 650 | 67.94 | temperature | 10 | 1440 | > th | dose dependent | rect. | 5 | 1 |
| 863 | 68.35 | temperature | 20 | 4320 | < th | dose dependent | no | NA | NA |
| 978 | 68.59 | temperature | 10 | 1440 | > th | dose dependent | sin | 10 | NA |