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Os04g0636000

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : SPla/RYanodine receptor SPRY domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 8.92 (0.0143) R2 : 0.793
β1 : 1.84 (0.0523) R2dD : 0.58 R2D : 0.45
β2 : 0.651 (0.0342) R2dC : 0.165 R2C : 0.144
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.52 (0.0305) R2dN8 : 0.177 R2N8 : 0.035
σ : 0.269
deviance : 32.9
__
_____
C
peak time of C : 1.28
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = wind, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
28.33 0.25 8.95 1.8 0.615 -0.172 -0.118 1.36 0.521 1.32 8.7 4568 -- --
29.59 0.253 8.92 1.76 0.617 -0.292 -0.0226 -- 0.57 1.23 9.337 4574 -- --
28.39 0.248 8.95 1.81 0.615 -0.173 -- 1.38 0.522 1.33 8.7 4568 -- --
28.88 0.25 8.94 1.69 0.688 -0.536 -- -- 0.449 1.25 10.4 2347 -- --
47.59 0.321 8.88 1.73 -- -0.433 -- 0.578 0.724 -- 10.28 4568 -- --
32.76 0.268 8.93 1.83 0.651 -- -0.187 -- 0.519 1.27 -- -- -- --
32.9 0.269 8.92 1.84 0.651 -- -- -- 0.52 1.28 -- -- -- --
47.12 0.32 8.87 1.81 -- -0.59 -- -- 0.752 -- 10.41 4531 -- --
71.46 0.394 8.9 -- 0.812 -1.06 -- -- 0.224 1.8 5.829 47029 -- --
59.08 0.359 8.92 1.86 -- -- -- -- 0.533 -- -- -- -- --
121.76 0.516 8.97 -- 0.683 -- -- -- 0.315 1.38 -- -- -- --
88.57 0.438 9.02 -- -- -1.27 -- -- 0.0572 -- 6.3 47520 -- --
150.48 0.573 8.96 -- -- -- -- -- 0.327 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 26.67 radiation 1 4320 > th dose independent rect. 18 1
12 26.93 humidity 90 14400 > th dose independent rect. 23 5
13 26.94 wind 1 14400 < th dose independent rect. 2 2
14 26.98 humidity 90 14400 < th dose independent rect. 23 5
16 27.06 humidity 90 14400 < th dose independent rect. 23 7
17 27.08 humidity 90 14400 < th dose independent rect. 23 2
18 27.10 wind 7 1440 > th dose independent rect. 7 1
23 27.16 radiation 1 14400 < th dose independent rect. 18 11
25 27.17 wind 7 4320 > th dose dependent rect. 7 3
27 27.19 humidity 90 14400 > th dose independent rect. 24 1
28 27.19 wind 1 43200 < th dose dependent rect. 5 1
31 27.20 radiation 1 4320 < th dose independent rect. 18 7
33 27.21 radiation 1 4320 < th dose independent rect. 18 3
53 27.25 wind 1 14400 > th dose independent rect. 2 2
57 27.28 wind 1 43200 < th dose independent rect. 5 2
64 27.31 wind 7 1440 > th dose dependent rect. 2 8
65 27.32 wind 3 43200 > th dose independent rect. 15 1
69 27.35 wind 7 1440 > th dose dependent rect. 7 1
72 27.36 wind 3 43200 < th dose independent rect. 15 1
73 27.36 wind 7 4320 < th dose independent rect. 4 2
74 27.36 wind 7 1440 < th dose independent rect. 3 5
76 27.38 wind 7 1440 > th dose independent rect. 2 6
78 27.39 wind 7 1440 > th dose dependent rect. 9 1
83 27.45 humidity 80 14400 > th dose dependent rect. 1 1
84 27.46 wind 7 4320 > th dose independent rect. 4 1
86 27.46 wind 1 43200 < th dose independent rect. 11 2
88 27.47 wind 7 4320 > th dose independent rect. 24 5
89 27.47 humidity 80 14400 > th dose dependent rect. 24 3
94 27.48 wind 7 4320 > th dose dependent rect. 4 1
95 27.48 wind 7 1440 > th dose dependent rect. 24 10
97 27.49 wind 7 4320 < th dose independent rect. 24 5
99 27.49 wind 1 43200 > th dose independent rect. 8 9
101 27.50 wind 9 4320 < th dose independent rect. 18 4
103 27.50 wind 1 43200 > th dose independent rect. 8 6
104 27.50 wind 7 1440 > th dose dependent rect. 1 2
105 27.50 wind 7 4320 > th dose dependent rect. 24 5
110 27.52 wind 7 1440 > th dose independent rect. 1 2
114 27.53 wind 1 43200 > th dose independent rect. 5 1
116 27.53 wind 5 43200 < th dose dependent rect. 15 1
122 27.54 radiation 1 14400 < th dose dependent rect. 3 2
134 27.56 wind 9 4320 > th dose dependent rect. 12 1
149 27.58 temperature 20 14400 < th dose independent rect. 10 7
151 27.58 temperature 20 14400 < th dose dependent rect. 9 1
152 27.58 wind 9 4320 > th dose dependent rect. 19 2
160 27.59 temperature 20 14400 < th dose independent rect. 11 5
161 27.59 temperature 20 14400 > th dose independent rect. 10 7
165 27.60 temperature 20 14400 > th dose independent rect. 11 5
171 27.60 radiation 1 14400 < th dose dependent rect. 19 10
173 27.61 temperature 20 14400 > th dose independent rect. 12 1
174 27.61 wind 1 43200 > th dose independent rect. 11 2
180 27.61 wind 1 43200 < th dose independent rect. 2 7
185 27.62 radiation 10 43200 > th dose independent rect. 17 1
209 27.63 temperature 20 14400 < th dose independent rect. 12 1
240 27.65 wind 1 43200 > th dose independent rect. 8 12
251 27.66 wind 9 4320 > th dose independent rect. 18 4
272 27.66 temperature 20 14400 < th dose dependent rect. 8 10
302 27.68 wind 9 4320 > th dose dependent rect. 15 11
304 27.69 wind 9 4320 < th dose independent rect. 12 1
321 27.70 wind 1 43200 > th dose independent rect. 8 14
322 27.70 wind 9 4320 > th dose dependent sin 15 NA
328 27.70 wind 9 4320 > th dose dependent rect. 15 9
336 27.71 wind 1 14400 < th dose dependent rect. 2 2
361 27.72 wind 1 43200 < th dose independent rect. 8 6
363 27.72 wind 9 4320 > th dose independent rect. 21 7
380 27.73 temperature 15 14400 > th dose independent rect. 5 4
384 27.73 wind 9 43200 > th dose dependent rect. 12 1
393 27.74 wind 1 43200 < th dose independent rect. 8 9
409 27.75 wind 9 43200 > th dose dependent rect. 15 1
422 27.76 wind 9 4320 > th dose dependent rect. 19 4
423 27.76 wind 9 4320 > th dose dependent rect. 12 14
425 27.77 wind 1 14400 > th dose independent rect. 23 2
430 27.77 wind 1 43200 < th dose independent rect. 8 14
439 27.77 wind 9 4320 > th dose dependent rect. 12 12
462 27.79 temperature 20 14400 < th dose independent rect. 9 1
468 27.79 wind 3 43200 < th dose independent rect. 13 5
483 27.80 temperature 20 14400 < th dose dependent rect. 17 1
489 27.81 wind 7 4320 > th dose independent rect. 19 1
490 27.81 temperature 20 14400 > th dose independent rect. 9 1
501 27.81 wind 1 43200 < th dose independent rect. 8 12
526 27.83 temperature 15 14400 > th dose independent rect. 4 1
534 27.83 wind 1 43200 > th dose independent rect. 8 18
581 27.87 wind 5 14400 < th dose independent rect. 1 1
604 27.88 wind 1 43200 < th dose dependent rect. 16 1
611 27.89 temperature 15 14400 < th dose independent rect. 4 1
614 27.89 wind 1 43200 > th dose independent rect. 2 6
647 27.90 radiation 1 4320 < th dose dependent rect. 18 8
661 27.91 radiation 1 4320 < th dose dependent rect. 18 3
672 27.92 wind 9 4320 < th dose independent sin 15 NA
686 27.92 wind 1 43200 < th dose independent rect. 8 17
700 27.93 temperature 20 14400 < th dose independent rect. 14 4
706 27.93 wind 9 4320 > th dose independent rect. 18 8
709 27.93 wind 9 4320 < th dose independent rect. 12 14
749 27.95 wind 1 43200 < th dose dependent rect. 8 14
759 27.96 wind 9 4320 < th dose independent rect. 15 11
765 27.96 humidity 50 14400 > th dose dependent rect. 1 2
805 27.98 wind 1 43200 < th dose dependent rect. 10 12
851 28.00 wind 9 4320 < th dose independent rect. 18 8
868 28.00 wind 1 43200 < th dose dependent rect. 2 6
873 28.00 wind 9 4320 > th dose dependent rect. 18 8
887 28.01 wind 3 43200 < th dose dependent rect. 11 5
928 28.03 wind 9 4320 > th dose independent rect. 12 1
938 28.03 wind 9 4320 < th dose independent rect. 15 8
980 28.06 temperature 20 14400 > th dose independent rect. 17 1
991 28.06 wind 1 43200 < th dose independent rect. 22 10