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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os04g0635000

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 7.05 (0.0653) R2 : 0.839
β1 : -2.48 (0.246) R2dD : 0.0384 R2D : -0.0311
β2 : 7.04 (0.183) R2dC : 0.739 R2C : -0.25
β3 : 8.97 (0.196) R2dE : 1.1 R2E : 0.04
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -3.58 (0.819) R2dD*E : 0.00569 R2D*E : -0.0288
γ1 : -1.07 (0.14) R2dN8 : 0.0318 R2N8 : -0.0243
σ : 1.2
deviance : 667.87
__
_____
C
peak time of C : 23.4
E
wheather : temperature
threshold : 6.27
memory length : 683
response mode : > th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 23.3
open length of G : 5.63

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
665.68 1.21 7.04 -2.71 6.22 8.35 -1.64 -4.74 -1.19 23.7 9.04 692 23.1 5.48
699.57 1.23 7 -2.27 7 9.52 -0.922 -- -1.03 23 6.962 687 23.2 5.43
667.87 1.2 7.05 -2.48 7.04 8.97 -- -3.58 -1.07 23.4 6.27 683 23.3 5.63
683.84 1.22 7 -2.16 7.31 9.09 -- -- -1.02 23.3 5.165 687 23.4 5.43
977.92 1.46 7.04 -2.39 -- 7.87 -- -2.6 -1.36 -- -20.96 1992 21.2 5.91
1030.81 1.51 6.62 -1.29 7.56 -- -2.61 -- -0.368 4.26 -- -- -- --
1049.74 1.52 6.61 -1.27 7.54 -- -- -- -0.353 4.25 -- -- -- --
947.13 1.43 6.91 -2.02 -- 9.16 -- -- -1.13 -- -18.38 1961 20.6 7.37
796.69 1.31 6.94 -- 6.89 8.46 -- -- -0.739 23.5 4.143 688 23.3 5.57
4121.41 3 6.65 -0.968 -- -- -- -- -0.153 -- -- -- -- --
1092.19 1.55 6.58 -- 7.52 -- -- -- -0.212 4.26 -- -- -- --
1071.84 1.52 6.67 -- -- 8.93 -- -- -0.699 -- -23.06 1967 20.4 7.55
4146.11 3.01 6.63 -- -- -- -- -- -0.0456 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 688.99 temperature 10.0 720 > th dose dependent rect. 23 5
5 711.19 temperature 20.0 270 > th dose independent rect. 24 20
9 725.49 radiation 1.0 43200 < th dose dependent rect. 20 1
17 738.04 radiation 1.0 90 < th dose dependent rect. 1 19
19 740.41 temperature 15.0 270 > th dose dependent rect. 24 9
21 741.45 radiation 1.0 90 < th dose dependent rect. 3 17
22 741.51 temperature 10.0 270 > th dose dependent rect. 24 11
24 742.07 temperature 30.0 720 < th dose dependent rect. 20 12
37 752.93 radiation 1.0 90 < th dose independent rect. 1 19
46 757.61 temperature 10.0 90 > th dose dependent rect. 2 18
61 764.43 wind 1.0 30 > th dose independent rect. 20 23
78 772.16 temperature 10.0 270 > th dose dependent rect. 23 21
80 772.28 atmosphere 1010.0 90 < th dose independent rect. 1 19
88 775.42 temperature 10.0 720 > th dose dependent rect. 17 18
105 780.15 wind 1.0 270 > th dose independent rect. 20 3
110 781.01 temperature 15.0 270 > th dose independent rect. 9 11
116 782.32 temperature 30.0 720 < th dose dependent rect. 5 2
121 783.46 wind 7.0 270 < th dose independent rect. 20 3
133 784.92 temperature 10.0 270 > th dose independent rect. 20 3
134 784.92 temperature 30.0 270 < th dose independent rect. 20 3
135 784.92 humidity 50.0 270 > th dose independent rect. 20 3
138 784.92 atmosphere 995.0 270 > th dose independent rect. 20 3
139 784.92 radiation 1.0 270 < th dose independent rect. 20 3
145 784.92 radiation 1.0 270 < th dose dependent rect. 20 3
150 784.95 wind 9.0 90 < th dose independent rect. 1 19
157 785.93 wind 9.0 270 < th dose independent rect. 23 21
158 786.02 precipitation 0.1 270 < th dose independent rect. 20 3
159 786.02 precipitation 0.1 270 < th dose dependent rect. 20 3
173 788.27 wind 7.0 90 < th dose independent rect. 20 5
179 789.62 atmosphere 1015.0 270 < th dose independent rect. 23 21
187 790.14 precipitation 0.1 30 < th dose independent rect. 20 23
188 790.14 precipitation 0.1 30 < th dose dependent rect. 20 23
190 790.26 temperature 30.0 270 < th dose independent rect. 20 13
191 790.58 temperature 10.0 30 > th dose independent rect. 19 1
193 790.58 temperature 30.0 30 < th dose independent rect. 19 1
194 790.58 humidity 50.0 30 > th dose independent rect. 19 1
196 790.58 atmosphere 995.0 30 > th dose independent rect. 19 1
197 790.58 atmosphere 1010.0 30 < th dose independent rect. 19 1
199 790.58 radiation 1.0 30 < th dose independent rect. 19 1
204 790.58 temperature 10.0 30 > th dose independent rect. 20 23
205 790.58 radiation 1.0 30 < th dose dependent rect. 19 1
213 790.72 wind 1.0 30 > th dose independent rect. 19 1
215 790.84 humidity 90.0 270 < th dose independent rect. 20 2
216 791.13 wind 9.0 30 < th dose independent rect. 19 1
217 791.29 temperature 10.0 90 > th dose independent rect. 20 5
218 791.29 temperature 30.0 90 < th dose independent rect. 20 5
219 791.29 humidity 50.0 90 > th dose independent rect. 20 5
222 791.29 atmosphere 995.0 90 > th dose independent rect. 20 5
223 791.29 radiation 1.0 90 < th dose independent rect. 20 5
230 791.29 radiation 1.0 90 < th dose dependent rect. 20 5
236 791.78 precipitation 0.1 90 < th dose independent rect. 20 5
237 791.78 precipitation 0.1 90 < th dose dependent rect. 20 5
241 792.71 temperature 30.0 270 < th dose dependent rect. 20 17
250 793.90 humidity 50.0 30 > th dose dependent rect. 19 1
253 794.14 temperature 10.0 720 > th dose dependent rect. 18 10
262 794.75 temperature 10.0 720 > th dose dependent rect. 17 12
268 795.98 wind 9.0 30 < th dose independent rect. 20 23
285 797.63 radiation 1.0 90 < th dose dependent rect. 17 3
290 797.99 humidity 50.0 90 > th dose independent rect. 1 19
321 798.98 wind 9.0 270 < th dose independent rect. 20 13
332 799.62 atmosphere 1015.0 270 < th dose independent rect. 9 11
333 799.62 temperature 10.0 270 > th dose independent rect. 20 13
334 799.62 humidity 50.0 270 > th dose independent rect. 20 13
335 799.62 atmosphere 995.0 270 > th dose independent rect. 20 13
337 799.74 temperature 30.0 720 < th dose dependent rect. 20 7
340 799.84 temperature 10.0 1440 > th dose independent rect. 21 6
343 799.84 temperature 30.0 1440 < th dose independent rect. 21 6
347 799.84 humidity 50.0 1440 > th dose independent rect. 21 6
353 799.84 atmosphere 995.0 1440 > th dose independent rect. 21 6
354 799.84 radiation 1.0 1440 < th dose independent rect. 21 6
374 799.84 temperature 10.0 1440 > th dose independent rect. 3 18
378 799.94 atmosphere 995.0 90 > th dose independent rect. 1 19
379 799.99 radiation 40.0 1440 < th dose dependent rect. 21 6
383 800.15 humidity 50.0 14400 > th dose independent rect. 19 2
410 800.72 atmosphere 995.0 30 > th dose dependent rect. 19 1
417 801.35 precipitation 0.1 270 < th dose independent rect. 23 21
419 801.35 precipitation 0.1 270 < th dose dependent rect. 23 21
420 801.51 precipitation 0.1 30 < th dose independent rect. 19 1
421 801.51 precipitation 0.1 30 < th dose dependent rect. 19 1
424 801.95 temperature 20.0 270 > th dose independent rect. 24 9
458 803.29 radiation 1.0 90 < th dose independent rect. 17 3
464 803.70 temperature 10.0 720 > th dose dependent rect. 23 13
480 804.60 temperature 10.0 720 > th dose dependent sin 10 NA
492 805.23 temperature 30.0 720 < th dose dependent sin 10 NA
507 805.78 wind 9.0 270 < th dose independent rect. 9 11
508 805.98 atmosphere 995.0 270 > th dose independent rect. 23 21
512 806.05 radiation 40.0 270 < th dose independent rect. 20 13
520 806.31 temperature 30.0 720 < th dose dependent rect. 20 5
561 807.68 humidity 50.0 270 > th dose independent rect. 23 21
566 807.97 radiation 1.0 90 < th dose dependent rect. 15 5
578 808.58 temperature 10.0 270 > th dose dependent rect. 20 3
650 810.54 atmosphere 995.0 30 > th dose independent rect. 20 23
654 810.66 wind 9.0 90 < th dose dependent rect. 1 19
657 810.68 atmosphere 1015.0 270 < th dose independent rect. 20 3
744 812.08 precipitation 0.1 90 < th dose independent rect. 1 19
745 812.08 precipitation 0.1 90 < th dose dependent rect. 1 19
759 812.60 temperature 20.0 270 > th dose independent rect. 24 5
820 814.94 atmosphere 995.0 90 > th dose dependent rect. 20 6
827 815.37 atmosphere 995.0 270 > th dose dependent rect. 20 3
828 815.44 temperature 10.0 30 > th dose dependent rect. 19 1
945 817.54 atmosphere 1015.0 90 < th dose independent rect. 20 5
993 818.25 wind 9.0 30 < th dose dependent rect. 19 1