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Os04g0634800

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 9.35 (0.0409) R2 : 0.621
β1 : 2.24 (0.15) R2dD : 0.191 R2D : 0.0477
β2 : 4.12 (0.38) R2dC : 1.31 R2C : -2.06
β3 : 6.35 (0.449) R2dE : 2.2 R2E : -1.16
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -5.1 (0.517) R2dD*E : 0.0791 R2D*E : 0.00254
γ1 : 1.54 (0.0889) R2dN8 : 0.349 R2N8 : 0.113
σ : 0.765
deviance : 270.03
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C
peak time of C : 16
E
wheather : radiation
threshold : 16.16
memory length : 716
response mode : < th
dose dependency : dose dependent
G
type of G : sin
peak or start time of G : 10.3
open length of G : --

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose dependent, type of G = sin)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
269.51 0.771 9.35 2.24 4.12 6.31 -1.45 -6.59 1.54 16.2 15.41 722 10.2 --
276.66 0.775 9.31 2.24 2.4 4.96 3.87 -- 1.59 15.2 15.59 721 12.1 --
270.03 0.765 9.35 2.24 4.12 6.35 -- -5.1 1.54 16 16.16 716 10.3 --
324.55 0.839 9.32 2.26 2.62 4.9 -- -- 1.55 15.8 16.03 735 11.5 --
376.52 0.904 9.23 3.66 -- 3.76 -- -4.17 2.23 -- 16.59 2085 13.2 --
342.02 0.867 9.37 2.01 1.33 -- -3.18 -- 1.29 1.51 -- -- -- --
381.03 0.914 9.36 2.12 1.33 -- -- -- 1.31 0.987 -- -- -- --
343.5 0.863 9.28 2.11 -- 2.43 -- -- 1.66 -- 23.68 2060 12.1 --
450.09 0.988 9.36 -- 2.6 5.18 -- -- 1.32 15.6 10 728 12.2 --
490.74 1.04 9.34 2.17 -- -- -- -- 1.34 -- -- -- -- --
499.18 1.05 9.42 -- 1.36 -- -- -- 1.08 1.05 -- -- -- --
458.64 0.997 9.32 -- -- 2.55 -- -- 1.44 -- 20 2072 12.2 --
614.61 1.16 9.4 -- -- -- -- -- 1.1 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 263.94 humidity 80 720 > th dose independent rect. 10 9
7 268.65 radiation 20 720 < th dose dependent rect. 13 15
8 268.66 humidity 70 720 > th dose dependent rect. 10 10
10 269.15 radiation 10 720 < th dose dependent rect. 13 13
12 269.62 radiation 20 720 < th dose dependent rect. 11 17
24 270.37 radiation 10 720 < th dose dependent rect. 10 9
25 270.42 radiation 20 720 < th dose dependent sin 16 NA
36 270.84 radiation 10 720 < th dose dependent rect. 13 6
46 271.42 radiation 20 720 < th dose dependent rect. 14 3
61 271.86 radiation 10 720 < th dose independent rect. 14 3
106 273.60 humidity 60 720 > th dose dependent sin 20 NA
165 275.49 humidity 70 1440 > th dose independent rect. 11 2
266 277.63 humidity 80 720 > th dose independent sin 21 NA
323 278.71 radiation 10 1440 > th dose independent rect. 9 3
367 279.51 radiation 10 720 < th dose independent rect. 14 16
373 279.61 radiation 10 720 < th dose independent rect. 13 13
384 279.82 humidity 70 720 > th dose dependent rect. 11 4
423 280.36 radiation 10 720 > th dose independent rect. 11 6
441 280.55 radiation 1 720 < th dose independent rect. 7 12
477 280.68 humidity 70 1440 < th dose independent rect. 11 2
486 280.80 radiation 10 1440 > th dose independent rect. 8 8
500 281.07 humidity 70 720 > th dose independent rect. 11 15
502 281.14 humidity 70 720 > th dose dependent rect. 15 2
503 281.15 radiation 10 1440 > th dose independent rect. 8 6
548 281.69 humidity 70 720 > th dose independent rect. 13 15
549 281.71 humidity 80 1440 > th dose independent rect. 24 16
559 281.79 humidity 70 720 > th dose independent rect. 11 17
567 281.86 humidity 80 1440 < th dose independent rect. 24 15
667 282.70 radiation 40 1440 < th dose dependent rect. 11 1
718 283.11 radiation 10 720 < th dose independent sin 16 NA
751 283.22 radiation 10 720 < th dose independent rect. 11 9
752 283.23 radiation 10 720 > th dose independent sin 17 NA
754 283.24 humidity 70 720 > th dose independent sin 18 NA
763 283.33 humidity 80 1440 < th dose independent rect. 9 5
803 283.58 radiation 1 1440 > th dose dependent rect. 11 1
819 283.66 radiation 1 720 < th dose independent rect. 8 18
844 283.88 humidity 90 1440 < th dose dependent rect. 11 3