Os04g0634700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Diacylglycerol kinase.
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Os04g0634700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Diacylglycerol kinase.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 81.68 | 0.425 | 10.2 | -0.0521 | 0.187 | -1.79 | 2.2 | -0.254 | -0.0237 | 14.5 | 19.89 | 30 | -- | -- |
| 81.73 | 0.421 | 10.2 | -0.0117 | 0.186 | -1.81 | 2.12 | -- | -0.0136 | 14.5 | 19.87 | 29 | -- | -- |
| 92.79 | 0.452 | 10.2 | 0.371 | 0.172 | -1.85 | -- | 2 | 0.0808 | 16.1 | 18 | 26 | -- | -- |
| 96.1 | 0.457 | 10.2 | 0.0763 | 0.203 | -1.91 | -- | -- | -0.00756 | 17.1 | 16.88 | 40 | -- | -- |
| 93.61 | 0.451 | 10.2 | 0.355 | -- | -1.72 | -- | 2.06 | 0.0626 | -- | 18.1 | 20 | -- | -- |
| 128.24 | 0.531 | 10.3 | -0.39 | 0.469 | -- | -1.64 | -- | -0.314 | 1.65 | -- | -- | -- | -- |
| 138.92 | 0.552 | 10.3 | -0.336 | 0.468 | -- | -- | -- | -0.305 | 1.59 | -- | -- | -- | -- |
| 97.83 | 0.461 | 10.2 | 0.0348 | -- | -1.77 | -- | -- | -0.0368 | -- | 16.62 | 37 | -- | -- |
| 96.17 | 0.457 | 10.2 | -- | 0.198 | -1.81 | -- | -- | -0.0206 | 17.4 | 17.5 | 40 | -- | -- |
| 152.32 | 0.577 | 10.3 | -0.317 | -- | -- | -- | -- | -0.294 | -- | -- | -- | -- | -- |
| 141.89 | 0.557 | 10.3 | -- | 0.462 | -- | -- | -- | -0.267 | 1.56 | -- | -- | -- | -- |
| 97.86 | 0.461 | 10.2 | -- | -- | -1.73 | -- | -- | -0.0413 | -- | 16.96 | 37 | -- | -- |
| 154.98 | 0.581 | 10.3 | -- | -- | -- | -- | -- | -0.259 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 76.32 | temperature | 20 | 30 | > th | dose dependent | rect. | 15 | 23 |
| 3 | 78.69 | temperature | 20 | 30 | > th | dose dependent | rect. | 13 | 23 |
| 8 | 81.09 | temperature | 20 | 10 | > th | dose dependent | rect. | 6 | 23 |
| 11 | 81.69 | temperature | 20 | 30 | > th | dose dependent | no | NA | NA |
| 14 | 81.97 | temperature | 20 | 30 | > th | dose dependent | rect. | 4 | 23 |
| 22 | 82.62 | temperature | 20 | 10 | > th | dose dependent | rect. | 23 | 23 |
| 26 | 83.78 | temperature | 30 | 30 | < th | dose dependent | rect. | 7 | 23 |
| 30 | 84.25 | temperature | 20 | 30 | > th | dose dependent | rect. | 15 | 21 |
| 31 | 84.34 | temperature | 20 | 10 | > th | dose dependent | rect. | 2 | 23 |
| 35 | 84.80 | temperature | 30 | 10 | < th | dose dependent | rect. | 1 | 23 |
| 36 | 84.90 | temperature | 20 | 30 | > th | dose dependent | rect. | 6 | 21 |
| 46 | 85.19 | temperature | 30 | 30 | < th | dose dependent | rect. | 19 | 23 |
| 47 | 85.20 | temperature | 30 | 30 | < th | dose dependent | rect. | 3 | 23 |
| 49 | 85.30 | temperature | 30 | 30 | < th | dose dependent | no | NA | NA |
| 50 | 85.30 | temperature | 30 | 30 | < th | dose dependent | rect. | 9 | 23 |
| 52 | 85.34 | temperature | 30 | 30 | < th | dose dependent | rect. | 11 | 23 |
| 58 | 85.56 | temperature | 30 | 10 | < th | dose dependent | rect. | 13 | 23 |
| 65 | 85.82 | temperature | 30 | 30 | < th | dose dependent | rect. | 21 | 23 |
| 70 | 85.99 | temperature | 25 | 30 | < th | dose independent | rect. | 3 | 23 |
| 71 | 86.04 | temperature | 30 | 30 | < th | dose dependent | rect. | 15 | 23 |
| 77 | 86.24 | temperature | 20 | 10 | > th | dose dependent | rect. | 8 | 23 |
| 78 | 86.25 | temperature | 30 | 30 | < th | dose dependent | rect. | 17 | 23 |
| 93 | 86.99 | temperature | 20 | 30 | > th | dose dependent | rect. | 17 | 23 |
| 107 | 87.52 | temperature | 20 | 10 | > th | dose dependent | rect. | 11 | 23 |
| 131 | 88.13 | temperature | 30 | 30 | < th | dose dependent | rect. | 23 | 23 |
| 147 | 88.62 | temperature | 25 | 30 | > th | dose independent | rect. | 15 | 23 |
| 163 | 89.18 | temperature | 25 | 90 | < th | dose independent | rect. | 7 | 23 |
| 176 | 89.68 | temperature | 20 | 10 | > th | dose dependent | rect. | 6 | 16 |
| 200 | 90.14 | temperature | 25 | 30 | > th | dose independent | rect. | 13 | 23 |
| 203 | 90.19 | temperature | 25 | 30 | < th | dose independent | rect. | 11 | 23 |
| 205 | 90.23 | temperature | 25 | 30 | < th | dose independent | rect. | 9 | 23 |
| 207 | 90.25 | temperature | 25 | 30 | < th | dose independent | rect. | 15 | 23 |
| 211 | 90.29 | temperature | 25 | 30 | < th | dose independent | no | NA | NA |
| 212 | 90.29 | temperature | 25 | 30 | < th | dose independent | rect. | 13 | 23 |
| 213 | 90.29 | temperature | 25 | 30 | < th | dose independent | rect. | 17 | 23 |
| 216 | 90.34 | temperature | 25 | 30 | < th | dose independent | rect. | 1 | 23 |
| 217 | 90.34 | temperature | 25 | 30 | < th | dose independent | rect. | 23 | 23 |
| 220 | 90.39 | temperature | 25 | 30 | < th | dose independent | rect. | 21 | 23 |
| 226 | 90.49 | temperature | 25 | 30 | < th | dose independent | rect. | 19 | 23 |
| 229 | 90.53 | temperature | 25 | 10 | > th | dose independent | rect. | 6 | 23 |
| 239 | 90.78 | temperature | 25 | 90 | > th | dose independent | rect. | 23 | 22 |
| 246 | 90.86 | temperature | 25 | 10 | > th | dose independent | rect. | 23 | 22 |
| 263 | 91.09 | temperature | 30 | 30 | < th | dose dependent | rect. | 5 | 23 |
| 268 | 91.17 | temperature | 25 | 30 | > th | dose independent | rect. | 4 | 21 |
| 273 | 91.27 | temperature | 25 | 30 | < th | dose independent | rect. | 3 | 21 |
| 310 | 91.57 | temperature | 25 | 30 | > th | dose independent | rect. | 15 | 21 |
| 326 | 91.71 | temperature | 25 | 10 | > th | dose independent | rect. | 2 | 23 |
| 356 | 92.10 | temperature | 25 | 10 | > th | dose independent | no | NA | NA |
| 385 | 92.48 | temperature | 10 | 30 | > th | dose dependent | sin | 22 | NA |
| 463 | 93.27 | temperature | 25 | 30 | > th | dose independent | rect. | 4 | 17 |
| 492 | 93.54 | temperature | 30 | 30 | < th | dose dependent | sin | 21 | NA |
| 495 | 93.56 | temperature | 25 | 10 | > th | dose independent | rect. | 8 | 23 |
| 566 | 94.32 | temperature | 25 | 90 | > th | dose independent | rect. | 20 | 23 |
| 596 | 94.57 | temperature | 25 | 30 | < th | dose independent | rect. | 5 | 23 |
| 711 | 95.40 | temperature | 25 | 10 | > th | dose independent | rect. | 6 | 19 |
| 743 | 95.55 | temperature | 25 | 10 | > th | dose independent | rect. | 11 | 23 |
| 756 | 95.69 | temperature | 25 | 10 | < th | dose independent | sin | 21 | NA |
| 768 | 95.78 | temperature | 25 | 10 | > th | dose independent | rect. | 6 | 15 |