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Os04g0634500

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to S-receptor kinase-like protein 2.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 8.94 (0.0214) R2 : 0.0185
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.132 (0.045) R2dN8 : 0.0239 R2N8 : 0.0185
σ : 0.402
deviance : 74.28
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
45.25 0.316 9.06 -1.27 0.298 0.402 0.0976 -1.65 -0.199 23.9 21.4 2551 -- --
47.71 0.322 9 -1.02 0.285 0.936 0.0512 -- -0.111 23.5 18.5 3551 -- --
45.28 0.313 9.06 -1.28 0.298 0.401 -- -1.64 -0.199 23.9 21.4 2583 -- --
47.55 0.321 9 -1.05 0.311 0.955 -- -- -0.117 0.00367 18.49 3535 -- --
50.78 0.332 9.06 -1.29 -- 0.434 -- -1.62 -0.202 -- 21.3 2464 -- --
58.69 0.359 8.96 -0.584 0.333 -- -0.0759 -- 0.0633 0.143 -- -- -- --
58.71 0.359 8.96 -0.581 0.333 -- -- -- 0.0637 0.0926 -- -- -- --
53.26 0.34 9 -1.07 -- 1.02 -- -- -0.122 -- 18.48 3737 -- --
65.86 0.378 8.94 -- 0.316 0.518 -- -- 0.0775 23.7 17.3 2976 -- --
65.69 0.379 8.95 -0.571 -- -- -- -- 0.0685 -- -- -- -- --
67.62 0.385 8.95 -- 0.325 -- -- -- 0.128 24 -- -- -- --
71.31 0.393 8.95 -- -- 0.491 -- -- 0.0898 -- 17.59 2299 -- --
74.28 0.402 8.94 -- -- -- -- -- 0.132 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 43.47 radiation 20.0 4320 > th dose dependent rect. 16 16
2 43.58 radiation 30.0 4320 < th dose independent rect. 16 16
3 43.79 temperature 20.0 1440 < th dose independent rect. 21 4
5 43.81 temperature 20.0 4320 < th dose independent rect. 21 1
6 43.81 temperature 20.0 1440 > th dose independent rect. 20 7
7 43.81 temperature 20.0 1440 < th dose independent rect. 20 7
9 43.85 temperature 20.0 1440 > th dose independent rect. 21 4
19 44.01 atmosphere 995.0 43200 < th dose independent rect. 21 17
22 44.01 humidity 90.0 14400 > th dose dependent rect. 23 11
26 44.05 humidity 90.0 14400 > th dose dependent rect. 2 7
44 44.13 atmosphere 995.0 43200 > th dose independent rect. 21 17
53 44.18 temperature 20.0 4320 > th dose independent rect. 21 1
59 44.19 humidity 90.0 14400 > th dose dependent sin 7 NA
65 44.21 radiation 30.0 4320 < th dose independent rect. 22 10
71 44.22 humidity 90.0 14400 > th dose dependent rect. 15 14
77 44.24 radiation 30.0 4320 < th dose independent rect. 7 1
82 44.25 radiation 30.0 4320 < th dose independent rect. 2 6
87 44.26 radiation 30.0 4320 < th dose independent rect. 4 4
114 44.31 atmosphere 995.0 43200 < th dose dependent sin 9 NA
138 44.37 humidity 90.0 14400 > th dose dependent rect. 4 3
141 44.37 atmosphere 995.0 43200 < th dose dependent rect. 21 13
162 44.41 atmosphere 995.0 43200 > th dose independent rect. 1 11
170 44.43 humidity 90.0 14400 > th dose dependent rect. 23 2
180 44.45 atmosphere 995.0 43200 > th dose independent rect. 2 9
181 44.45 atmosphere 995.0 43200 < th dose independent rect. 1 11
185 44.46 humidity 90.0 14400 > th dose independent rect. 23 1
199 44.49 humidity 90.0 14400 > th dose dependent rect. 5 1
204 44.50 atmosphere 995.0 43200 < th dose independent rect. 2 9
251 44.58 atmosphere 995.0 43200 > th dose independent rect. 4 5
256 44.60 atmosphere 995.0 43200 < th dose independent rect. 5 3
261 44.61 atmosphere 995.0 43200 < th dose independent rect. 4 5
262 44.61 atmosphere 995.0 43200 < th dose independent rect. 3 7
267 44.61 atmosphere 995.0 43200 < th dose dependent rect. 2 7
274 44.63 atmosphere 995.0 43200 < th dose dependent rect. 4 4
288 44.67 atmosphere 995.0 43200 < th dose independent sin 7 NA
290 44.67 radiation 1.0 43200 < th dose independent rect. 11 3
300 44.68 radiation 1.0 43200 < th dose dependent rect. 11 3
310 44.69 radiation 1.0 43200 > th dose independent rect. 11 4
314 44.69 humidity 90.0 14400 > th dose dependent rect. 22 5
323 44.71 atmosphere 995.0 43200 > th dose independent rect. 5 3
338 44.73 temperature 20.0 1440 > th dose independent sin 13 NA
339 44.73 radiation 1.0 43200 > th dose independent rect. 14 1
344 44.74 temperature 20.0 1440 < th dose independent sin 12 NA
380 44.80 radiation 30.0 43200 < th dose independent rect. 2 5
391 44.81 radiation 20.0 4320 > th dose dependent rect. 6 2
454 44.88 humidity 90.0 43200 > th dose dependent rect. 12 2
485 44.93 humidity 90.0 43200 > th dose dependent rect. 10 4
516 44.97 radiation 30.0 43200 < th dose independent rect. 21 10
546 45.03 temperature 25.0 1440 < th dose dependent rect. 18 10
548 45.04 humidity 90.0 43200 < th dose independent rect. 12 1
565 45.06 atmosphere 995.0 43200 > th dose independent sin 7 NA
576 45.08 precipitation 0.1 43200 > th dose independent rect. 10 1
577 45.08 precipitation 0.1 43200 < th dose independent rect. 10 1
581 45.08 precipitation 0.1 43200 > th dose dependent rect. 10 1
582 45.08 precipitation 0.1 43200 < th dose dependent rect. 10 1
618 45.12 wind 7.0 43200 > th dose dependent rect. 10 3
624 45.13 radiation 30.0 43200 < th dose independent rect. 19 12
633 45.14 wind 1.0 14400 < th dose dependent rect. 21 5
639 45.15 humidity 90.0 43200 > th dose independent rect. 10 4
648 45.16 precipitation 0.1 43200 > th dose independent rect. 6 7
651 45.16 temperature 20.0 4320 > th dose dependent rect. 9 1
654 45.16 precipitation 0.1 43200 > th dose dependent rect. 6 7
658 45.17 radiation 30.0 43200 < th dose independent rect. 17 14
660 45.17 temperature 25.0 1440 < th dose dependent rect. 18 15
661 45.18 wind 9.0 43200 > th dose independent rect. 10 3
668 45.19 precipitation 0.1 43200 < th dose independent rect. 6 7
673 45.19 precipitation 0.1 43200 < th dose dependent rect. 6 7
687 45.21 wind 9.0 43200 > th dose independent rect. 21 2
691 45.21 wind 1.0 14400 < th dose dependent rect. 19 7
700 45.22 temperature 25.0 1440 < th dose dependent sin 12 NA
727 45.25 humidity 90.0 43200 > th dose independent rect. 12 1
732 45.25 temperature 10.0 1440 > th dose dependent rect. 19 9
759 45.27 temperature 25.0 1440 < th dose dependent rect. 21 2
768 45.27 atmosphere 995.0 43200 < th dose dependent rect. 10 20
771 45.28 wind 9.0 43200 < th dose independent rect. 10 3
784 45.29 wind 7.0 43200 < th dose independent rect. 21 3
785 45.29 precipitation 0.1 43200 > th dose independent rect. 7 4
787 45.29 temperature 20.0 4320 > th dose dependent rect. 8 3
790 45.29 precipitation 0.1 43200 > th dose dependent rect. 7 4
799 45.30 wind 9.0 43200 > th dose dependent rect. 18 1
813 45.31 precipitation 0.1 43200 < th dose independent rect. 7 4
823 45.31 precipitation 0.1 43200 < th dose dependent rect. 7 4
866 45.33 temperature 20.0 1440 > th dose independent rect. 12 19
883 45.34 temperature 20.0 1440 < th dose independent rect. 12 19
953 45.39 wind 7.0 43200 > th dose dependent rect. 21 3
962 45.39 temperature 10.0 1440 > th dose dependent rect. 17 16
965 45.40 humidity 90.0 43200 < th dose independent rect. 10 3
986 45.41 wind 7.0 43200 > th dose dependent rect. 22 1