FiT-DB / Search/ Help/ Sample detail

Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os04g0634400

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Curculin-like (mannose-binding) lectin domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.94 (0.0392) R2 : 0.62
β1 : 0.997 (0.144) R2dD : 0.0404 R2D : 0.0384
β2 : -- (--) R2dC : -- R2C : --
β3 : 3.45 (0.159) R2dE : 0.395 R2E : 0.433
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : 6.75 (0.722) R2dD*E : 0.0662 R2D*E : 0.075
γ1 : -0.671 (0.0838) R2dN8 : 0.0752 R2N8 : 0.0884
σ : 0.734
deviance : 248.22
__
_____
C
peak time of C : --
E
wheather : atmosphere
threshold : 1020
memory length : 360
response mode : < th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 12.2
open length of G : 6.95

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = atmosphere, response mode = < th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
239.44 0.727 3.94 0.994 0.451 3.17 -0.28 6.58 -0.674 14.8 1019 365 12.4 6.93
258.93 0.749 3.97 0.887 0.275 4.5 -1.98 -- -0.697 7.98 1017 443 11.4 6.48
239.61 0.721 3.94 0.985 0.47 3.12 -- 6.45 -0.679 14.8 1019 369 12.4 6.95
282.93 0.783 3.94 0.903 0.436 3.4 -- -- -0.673 14.5 1018 350 12.5 7.02
248.22 0.734 3.94 0.997 -- 3.45 -- 6.75 -0.671 -- 1020 360 12.2 6.95
312.26 0.828 4.02 0.988 2.04 -- 4.03 -- -0.743 18.5 -- -- -- --
351.79 0.878 4.01 0.936 2.06 -- -- -- -0.728 18.3 -- -- -- --
285.78 0.787 3.96 0.8 -- 4.1 -- -- -0.714 -- 1017 382 12.1 6.23
299.64 0.806 3.96 -- 0.44 3.93 -- -- -0.692 15.6 1014 356 12.5 6.63
572.23 1.12 3.97 0.88 -- -- -- -- -0.773 -- -- -- -- --
374.89 0.906 4.03 -- 2.05 -- -- -- -0.832 18.3 -- -- -- --
303.3 0.811 3.96 -- -- 4.23 -- -- -0.743 -- 1016 387 12.1 6.25
592.67 1.14 3.99 -- -- -- -- -- -0.871 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 248.15 atmosphere 1015.0 270 < th dose dependent rect. 14 5
2 248.17 atmosphere 1015.0 270 < th dose dependent rect. 13 8
4 248.86 atmosphere 1005.0 270 < th dose independent rect. 16 2
6 249.33 atmosphere 1015.0 270 < th dose dependent rect. 15 3
33 258.33 radiation 10.0 90 > th dose independent rect. 9 7
37 259.09 temperature 30.0 270 < th dose independent rect. 18 9
41 259.66 humidity 60.0 270 > th dose independent rect. 18 9
49 260.25 radiation 1.0 270 < th dose independent rect. 18 9
65 260.59 radiation 20.0 10 < th dose dependent sin 22 NA
66 260.65 wind 7.0 270 < th dose independent rect. 7 7
68 260.78 radiation 1.0 270 < th dose dependent rect. 18 9
72 261.10 precipitation 0.1 270 < th dose independent rect. 7 7
73 261.10 precipitation 0.1 270 < th dose dependent rect. 7 7
74 261.16 temperature 20.0 270 > th dose independent rect. 13 7
75 261.19 radiation 1.0 270 > th dose independent rect. 7 7
76 261.34 precipitation 0.1 270 < th dose independent rect. 18 9
77 261.34 precipitation 0.1 270 < th dose dependent rect. 18 9
78 261.36 temperature 15.0 270 > th dose independent rect. 7 7
81 261.40 atmosphere 995.0 270 > th dose independent rect. 7 7
82 261.40 atmosphere 1015.0 270 < th dose independent rect. 7 7
83 261.40 temperature 10.0 270 > th dose independent rect. 14 17
88 261.59 wind 7.0 270 < th dose independent rect. 15 16
99 262.00 atmosphere 995.0 270 > th dose independent rect. 18 9
104 262.02 radiation 40.0 270 < th dose independent rect. 15 16
109 262.15 wind 9.0 270 < th dose independent rect. 18 9
113 262.27 temperature 10.0 270 > th dose independent rect. 18 9
118 262.27 temperature 10.0 270 > th dose independent rect. 3 15
119 262.27 atmosphere 1015.0 270 < th dose independent rect. 3 15
120 262.28 humidity 90.0 90 < th dose independent rect. 9 7
127 262.61 radiation 20.0 10 < th dose dependent rect. 10 10
133 262.97 precipitation 0.1 270 < th dose independent rect. 17 22
134 262.97 precipitation 0.1 270 < th dose dependent rect. 17 22
137 263.15 precipitation 0.1 270 < th dose independent rect. 20 17
138 263.15 precipitation 0.1 270 < th dose dependent rect. 20 17
139 263.20 precipitation 0.1 90 < th dose independent rect. 9 7
140 263.20 precipitation 0.1 90 < th dose dependent rect. 9 7
142 263.25 atmosphere 1010.0 90 < th dose independent rect. 16 17
144 263.28 atmosphere 1010.0 10 < th dose dependent rect. 16 4
145 263.29 atmosphere 1010.0 270 < th dose independent rect. 13 8
146 263.31 radiation 40.0 270 < th dose independent rect. 13 18
153 263.45 wind 7.0 270 < th dose independent rect. 13 7
157 263.54 wind 9.0 270 < th dose independent rect. 3 15
158 263.60 wind 9.0 90 < th dose independent rect. 9 7
163 263.75 temperature 15.0 90 > th dose independent rect. 9 7
180 263.81 atmosphere 1015.0 90 < th dose independent rect. 9 7
184 263.91 temperature 15.0 270 > th dose independent rect. 20 17
189 264.07 wind 7.0 270 < th dose independent rect. 20 17
190 264.08 radiation 20.0 10 < th dose dependent rect. 6 14
193 264.16 precipitation 0.1 270 < th dose independent rect. 8 16
195 264.16 precipitation 0.1 270 < th dose dependent rect. 8 16
203 264.26 radiation 40.0 270 < th dose independent rect. 12 7
215 264.46 temperature 10.0 270 > th dose independent rect. 13 7
219 264.46 atmosphere 995.0 270 > th dose independent rect. 20 17
220 264.51 radiation 20.0 90 < th dose independent rect. 12 8
223 264.54 temperature 10.0 90 > th dose dependent rect. 9 7
243 264.56 radiation 40.0 30 < th dose dependent rect. 13 7
251 264.70 radiation 10.0 30 > th dose independent sin 21 NA
259 264.77 atmosphere 1010.0 270 < th dose independent rect. 14 17
263 264.88 radiation 20.0 90 < th dose independent rect. 13 20
283 265.17 radiation 30.0 270 < th dose independent rect. 13 5
286 265.22 radiation 10.0 30 < th dose independent rect. 10 10
288 265.23 radiation 20.0 10 < th dose dependent rect. 8 12
290 265.24 temperature 10.0 270 > th dose dependent rect. 14 6
291 265.24 atmosphere 1015.0 270 < th dose dependent rect. 14 17
296 265.27 temperature 10.0 270 > th dose dependent rect. 15 3
297 265.31 radiation 10.0 10 > th dose independent rect. 11 5
380 266.16 radiation 10.0 30 < th dose independent sin 22 NA
389 266.26 temperature 10.0 270 > th dose dependent rect. 7 7
392 266.29 wind 1.0 270 > th dose independent rect. 7 7
393 266.29 wind 7.0 270 < th dose independent rect. 18 21
420 266.54 atmosphere 1015.0 90 < th dose dependent rect. 16 17
450 266.69 temperature 10.0 270 > th dose dependent rect. 8 5
470 266.85 radiation 40.0 270 < th dose dependent rect. 12 6
486 267.00 temperature 20.0 270 > th dose dependent rect. 16 1
499 267.07 wind 1.0 270 > th dose independent rect. 18 9
506 267.10 humidity 50.0 10 > th dose independent rect. 17 16
510 267.13 atmosphere 995.0 270 > th dose dependent rect. 18 8
530 267.18 wind 7.0 270 < th dose independent rect. 15 3
542 267.27 wind 1.0 270 > th dose independent rect. 13 7
579 267.58 wind 1.0 90 > th dose independent rect. 9 7
641 267.94 temperature 15.0 270 > th dose independent rect. 18 21
653 268.00 radiation 10.0 30 < th dose independent rect. 8 12
666 268.11 radiation 40.0 90 < th dose dependent rect. 13 20
670 268.13 wind 1.0 270 > th dose independent rect. 15 3
675 268.16 radiation 10.0 10 < th dose independent rect. 6 14
683 268.24 atmosphere 995.0 90 > th dose independent rect. 16 17
708 268.31 radiation 40.0 270 < th dose independent rect. 15 3
710 268.32 temperature 10.0 270 > th dose independent rect. 15 3
724 268.37 atmosphere 995.0 270 > th dose independent rect. 18 21
731 268.39 temperature 10.0 270 > th dose dependent rect. 14 17
837 269.05 wind 9.0 270 < th dose independent rect. 8 16
848 269.14 temperature 25.0 270 > th dose independent rect. 16 1
858 269.18 wind 9.0 270 < th dose dependent rect. 13 7
859 269.20 wind 9.0 270 < th dose dependent rect. 7 7
874 269.29 atmosphere 995.0 270 > th dose independent rect. 14 17
887 269.33 radiation 40.0 90 < th dose dependent rect. 15 18
945 269.56 wind 7.0 270 < th dose independent rect. 24 8
954 269.62 wind 1.0 270 > th dose independent rect. 9 15
957 269.63 wind 5.0 10 < th dose independent rect. 16 4
959 269.63 humidity 70.0 270 > th dose independent rect. 24 8
971 269.67 atmosphere 1015.0 270 < th dose independent rect. 24 8
975 269.68 temperature 10.0 270 > th dose independent rect. 24 8
977 269.68 temperature 30.0 270 < th dose independent rect. 24 8
978 269.68 humidity 50.0 270 > th dose independent rect. 24 8
980 269.68 atmosphere 995.0 270 > th dose independent rect. 24 8
981 269.68 temperature 10.0 270 > th dose independent rect. 8 16
988 269.71 radiation 30.0 270 < th dose independent rect. 24 8